Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 8.7e-122 440.3 215 100.0
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.2e-47 192.6 194 58.8
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 4.1e-47 192.2 193 55.4
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-43 180.6 189 52.9
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.3e-40 170.6 185 53.5
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 3.2e-39 166.0 196 49.5
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-38 163.7 193 46.6
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 6.0e-38 161.8 196 49.0
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 7.8e-38 161.4 195 47.7
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-37 160.2 168 53.6
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.0e-37 159.5 218 46.3
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.9e-37 159.1 163 57.1
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 5.1e-37 158.7 185 49.2
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 5.1e-37 158.7 185 49.2
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 5.1e-37 158.7 185 49.2
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 5.1e-37 158.7 185 49.2
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 5.1e-37 158.7 185 49.2
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 5.1e-37 158.7 185 49.2
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 5.1e-37 158.7 186 47.8
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.6e-37 158.3 189 47.6
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.3e-36 154.8 189 47.6
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.3e-36 154.8 195 46.7
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 2.8e-35 152.9 206 44.2
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.6e-35 152.5 159 54.7
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.1e-35 151.4 193 48.7
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.0e-34 149.1 185 44.3
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 6.8e-34 148.3 200 46.5
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-33 147.5 216 43.1
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-33 146.0 193 46.1
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.6e-33 144.8 191 49.2
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 9.9e-33 144.4 193 45.6
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 9.9e-33 144.4 195 44.1
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 9.9e-33 144.4 193 45.6
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-31 139.8 197 49.2
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-31 139.8 197 49.2
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-31 139.8 189 43.9
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 5.4e-31 138.7 186 45.7
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 9.2e-31 137.9 188 45.2
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.6e-30 137.1 215 44.7
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 1.3e-29 134.0 185 42.7
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-29 133.7 173 45.7
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 4.3e-28 129.0 193 40.4
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-27 127.1 154 46.1
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 2.1e-27 126.7 194 42.3
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 3.6e-27 125.9 188 47.3
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 1.4e-26 124.0 198 41.4
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-26 124.0 198 41.4
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 1.4e-26 124.0 196 40.3
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-26 123.6 196 40.3
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 4.0e-26 122.5 196 40.8
Thhalv10022100m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.4e-25 119.4 178 42.1
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 4.4e-25 119.0 201 40.3
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 5.8e-25 118.6 201 38.8
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 7.6e-25 118.2 201 40.3
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 9.9e-25 117.9 201 38.8
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 2.9e-24 116.3 201 39.8
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 4.2e-23 112.5 193 36.3
A02p35860 Brassica napus HOM05D002743 ORTHO05D002895 9.3e-23 111.3 175 42.3
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 3.0e-21 106.3 188 38.8
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.5e-20 103.2 212 35.4
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.3e-20 102.8 96 60.4
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 5.6e-20 102.1 147 42.2
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 4.8e-19 99.0 201 31.8
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 8.1e-19 98.2 207 34.3
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.4e-18 97.4 195 37.9
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 1.8e-18 97.1 145 42.1
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-18 96.7 208 36.1
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.1e-18 96.3 140 45.0
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.9e-18 95.1 199 35.2
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 6.9e-18 95.1 159 40.9
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.0e-18 94.7 199 32.7
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-17 94.4 202 37.6
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.4e-17 92.8 211 36.0
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 4.5e-17 92.4 193 36.3
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 4.5e-17 92.4 193 35.8
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 4.5e-17 92.4 218 32.1
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.8e-17 92.0 199 34.2
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 5.8e-17 92.0 206 36.9
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 9.9e-17 91.3 229 33.2
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-16 90.5 199 35.7
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-16 90.5 199 35.7
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.7e-16 90.5 199 37.2
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.8e-16 89.4 221 35.3
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-16 89.4 197 34.5
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-16 89.4 192 35.4
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.9e-16 89.0 191 36.1
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 6.4e-16 88.6 198 35.9
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 6.4e-16 88.6 195 30.8
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 6.4e-16 88.6 191 33.5
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 6.4e-16 88.6 198 35.9
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-15 87.4 203 32.0
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-15 87.4 199 34.7
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.4e-15 87.4 188 31.9
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-15 87.0 198 36.4
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-15 86.7 203 31.0
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-15 86.7 198 33.3
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.2e-15 86.3 194 34.5
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 3.2e-15 86.3 203 31.5
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 4.2e-15 85.9 209 35.9
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 5.4e-15 85.5 198 33.3
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 5.4e-15 85.5 191 34.0
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.4e-15 85.5 205 35.6
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.4e-15 85.5 205 35.6
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 7.1e-15 85.1 185 33.5
AL7G33200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.1e-15 85.1 196 35.7
BcaB04g19549 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-15 85.1 187 34.2
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-15 85.1 198 31.8
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.1e-15 85.1 160 40.0
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.3e-15 84.7 192 29.7
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.3e-15 84.7 190 32.1
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 9.3e-15 84.7 195 30.3
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 9.3e-15 84.7 198 32.3
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 9.3e-15 84.7 203 31.0
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 9.3e-15 84.7 207 30.9
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 9.3e-15 84.7 206 32.5
BolC9t58491H Brassica oleracea HOM05D002743 ORTHO05D002895 1.2e-14 84.3 184 34.2
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 1.2e-14 84.3 198 31.8
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 1.2e-14 84.3 201 30.8
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.2e-14 84.3 191 36.6
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-14 84.0 186 33.3
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 2.1e-14 83.6 201 31.8
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.7e-14 83.2 191 33.5
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.5e-14 82.8 195 29.2
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.6e-14 82.4 199 35.7
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.6e-14 82.4 197 30.5
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 4.6e-14 82.4 203 32.0
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.6e-14 82.4 197 31.5
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.6e-14 82.4 187 33.7
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 6.0e-14 82.0 193 32.1
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 7.9e-14 81.6 196 33.7
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-13 80.9 195 33.8
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-13 80.1 199 31.2
C04p44820 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-13 80.1 99 46.5
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-13 80.1 199 31.2
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-13 80.1 211 34.6
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.3e-13 80.1 209 36.4
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-13 79.7 148 36.5
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.0e-13 79.7 202 32.2
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 3.9e-13 79.3 191 31.9
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 3.9e-13 79.3 148 38.5
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 6.7e-13 78.6 197 34.0
CARHR286570 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.7e-13 78.2 176 34.1
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-12 77.8 198 30.8
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.1e-12 77.8 195 34.9
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-12 77.4 148 37.8
C09p56250 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-12 77.0 140 36.4
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 2.5e-12 76.6 195 34.4
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.5e-12 76.6 194 36.1
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-12 76.3 197 33.5
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 5.6e-12 75.5 208 31.7
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.6e-12 75.5 197 29.9
BcaC04g19490 Brassica carinata HOM05D002743 ORTHO05D002895 5.6e-12 75.5 149 36.2
C09p55180 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-12 75.5 149 36.2
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.6e-12 75.5 198 31.3
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 7.4e-12 75.1 148 37.2
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 9.6e-12 74.7 191 33.0
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 9.6e-12 74.7 191 33.0
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 9.6e-12 74.7 191 33.0
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-11 73.9 196 28.6
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-11 73.9 135 39.3
C09p56220 Brassica napus HOM05D002609 ORTHO05D002820 3.6e-11 72.8 150 35.3
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 3.6e-11 72.8 206 32.5
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.4e-10 70.9 189 29.6
BcaB06g27161 Brassica carinata HOM05D002743 ORTHO05D002895 1.4e-10 70.9 106 38.7
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.8e-10 70.5 197 26.4
BraA02t08588Z Brassica rapa HOM05D002743 ORTHO05D002895 2.4e-10 70.1 87 46.0
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 3.1e-10 69.7 133 36.1
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 5.3e-10 68.9 70 55.7
Sp5g25320 Schrenkiella parvula HOM05D002743 ORTHO05D002895 6.9e-10 68.6 143 35.0
Thhalv10023522m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 9.0e-10 68.2 188 30.9
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 1.5e-09 67.4 191 29.8
BolC9t58494H Brassica oleracea HOM05D002743 ORTHO05D002895 1.5e-09 67.4 102 40.2
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.6e-09 66.6 199 32.7
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 2.6e-09 66.6 87 44.8
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.6e-09 65.1 201 29.4
Lsat_1_v5_gn_5_38761 Lactuca sativa HOM05D008898 ORTHO05D001155 9.9e-09 64.7 122 31.1
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 1.3e-08 64.3 138 31.2
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-08 63.9 177 27.7
BcaC04g19386 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-08 62.8 141 31.2
Lsat_1_v5_gn_0_31161 Lactuca sativa HOM05D008898 ORTHO05D001155 4.9e-08 62.4 142 31.0
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.4e-08 61.6 98 40.8
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.4e-08 61.6 134 32.8
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.1e-07 61.2 187 26.2
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-07 60.8 167 29.3
Thhalv10023870m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.5e-07 58.9 121 37.2
BolC6t35602H Brassica oleracea HOM05D002743 ORTHO05D002895 4.6e-06 55.8 159 31.4


User provided reference genes

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