Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.0e-110 401.7 191 100.0
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 3.4e-109 398.3 191 99.0
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 8.6e-105 383.6 191 94.2
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.5e-104 382.9 191 95.3
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 4.3e-104 381.3 191 94.8
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 4.3e-104 381.3 191 94.8
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 4.3e-104 381.3 191 94.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 4.3e-104 381.3 191 94.8
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.2e-103 379.8 191 94.2
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.6e-103 379.4 191 94.2
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.6e-103 379.4 191 94.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 6.2e-103 377.5 191 94.2
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 6.2e-103 377.5 191 94.2
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 6.2e-103 377.5 191 94.2
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.0e-102 376.7 191 93.7
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.0e-102 376.7 191 93.7
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 4.0e-102 374.8 183 97.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 8.9e-102 373.6 191 93.2
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.4e-101 371.7 188 93.1
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 187 90.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 5.4e-99 364.4 191 89.0
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 9.2e-99 363.6 188 89.9
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.6e-98 362.8 187 90.4
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-98 362.8 187 90.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 2.0e-98 362.5 188 88.8
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 88.3
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 90.4
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 3.5e-98 361.7 188 88.8
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 4.6e-98 361.3 190 88.9
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 4.6e-98 361.3 188 89.4
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 89.4
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 87.8
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 7.8e-98 360.5 188 89.4
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 7.8e-98 360.5 188 89.4
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 7.8e-98 360.5 187 89.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 7.8e-98 360.5 186 88.2
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 7.8e-98 360.5 187 89.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 7.8e-98 360.5 187 89.8
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.0e-97 360.1 187 89.8
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 188 87.8
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 188 88.8
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.7e-97 359.4 188 89.4
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.7e-97 359.4 185 90.8
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.7e-97 359.4 189 89.4
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.3e-97 359.0 182 91.8
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.3e-97 359.0 187 89.8
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.3e-97 359.0 188 88.8
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.3e-97 359.0 187 89.3
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.3e-97 359.0 188 87.8
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 2.3e-97 359.0 188 87.2
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 2.3e-97 359.0 188 88.8
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 3.0e-97 358.6 188 88.3
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 3.0e-97 358.6 188 88.8
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 3.0e-97 358.6 188 87.8
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 88.8
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 88.8
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 88.8
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 88.8
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 88.8
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 87.8
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.9e-97 358.2 190 86.8
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 5.0e-97 357.8 187 89.8
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 6.6e-97 357.5 188 88.3
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 6.6e-97 357.5 187 88.8
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.6e-97 357.5 188 87.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 8.6e-97 357.1 186 89.2
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 8.6e-97 357.1 187 89.3
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.1e-96 356.7 186 89.2
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.1e-96 356.7 186 89.2
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.1e-96 356.7 182 91.2
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 87.8
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 87.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.1e-96 356.7 186 88.7
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 88.8
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 86.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 88.3
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 88.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.5e-96 356.3 187 88.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.5e-96 356.3 187 88.8
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-96 355.9 187 87.2
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-96 355.9 187 87.2
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-96 355.9 187 87.2
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.9e-96 355.9 188 89.4
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.9e-96 355.9 188 88.3
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.9e-96 355.9 186 88.7
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 2.5e-96 355.5 186 88.2
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 2.5e-96 355.5 182 90.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.5e-96 355.5 187 88.8
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 2.5e-96 355.5 185 89.7
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.3e-96 355.1 188 87.2
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 3.3e-96 355.1 186 87.6
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 3.3e-96 355.1 186 88.2
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.3e-96 355.1 190 86.3
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.3e-96 355.1 188 88.3
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.3e-96 355.1 186 88.7
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.3e-96 354.8 187 88.2
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.3e-96 354.8 188 87.8
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 5.6e-96 354.4 182 90.1
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 5.6e-96 354.4 182 90.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 7.3e-96 354.0 182 90.1
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 7.3e-96 354.0 186 87.6
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 7.3e-96 354.0 188 86.7
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 9.5e-96 353.6 190 87.9
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.2e-95 353.2 186 89.2
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.2e-95 353.2 188 86.7
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.2e-95 353.2 189 87.8
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.6e-95 352.8 187 86.6
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.6e-95 352.8 187 87.2
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 3.6e-95 351.7 188 86.7
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.6e-95 351.7 188 87.2
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 3.6e-95 351.7 188 85.6
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.7e-95 351.3 182 88.5
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.2e-95 350.9 186 87.1
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 6.2e-95 350.9 182 89.0
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.2e-95 350.9 189 87.3
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 6.2e-95 350.9 188 86.2
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 8.1e-95 350.5 187 86.6
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.1e-94 350.1 188 85.6
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.4e-94 349.7 188 86.7
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.4e-94 349.7 208 81.2
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.4e-94 349.7 200 82.5
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.8e-94 349.4 187 86.6
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 3.1e-94 348.6 186 88.2
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 3.1e-94 348.6 187 85.0
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 4.0e-94 348.2 187 85.6
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 6.8e-94 347.4 199 83.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 8.9e-94 347.1 182 86.8
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.4e-93 345.1 186 86.0
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 5.8e-93 344.4 182 87.4
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 5.8e-93 344.4 185 86.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 7.5e-93 344.0 182 87.4
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 8.3e-92 340.5 183 85.2
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.2e-91 338.6 183 82.5
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.9e-89 331.6 183 83.1
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 9.5e-88 327.0 253 66.0
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.6e-87 325.1 189 82.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 8.9e-86 320.5 182 78.0
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.7e-84 316.2 191 78.0
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.8e-84 315.1 183 79.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.2e-82 310.1 162 87.7
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-78 296.6 188 73.9
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.2e-77 293.5 154 85.7
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 9.6e-72 273.9 143 88.8
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.4e-70 270.0 143 84.6
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 6.9e-70 267.7 139 87.1
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-69 266.5 142 87.3
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-67 260.4 129 90.7
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.8e-63 245.7 136 83.1
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-62 243.8 128 83.6
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-62 243.4 188 65.4
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.5e-61 240.0 188 55.3
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.4e-61 238.8 164 72.0
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.6e-61 237.7 150 76.0
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 2.2e-60 236.1 188 65.4
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.6e-58 229.9 187 56.7
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 7.9e-50 201.1 166 63.3
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.5e-48 196.8 157 66.9
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-45 187.2 90 90.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.2e-43 179.1 90 87.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.7e-42 176.0 103 76.7
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.6e-42 175.6 90 85.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.9e-42 174.5 87 86.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.3e-41 173.7 87 86.2
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.0e-41 172.6 87 86.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.1e-41 171.8 87 86.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 85.1
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-38 163.3 87 83.9
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.4e-35 151.0 158 50.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-34 150.2 79 82.3
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 6.1e-34 148.3 98 76.5
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 9.7e-32 141.0 69 82.6
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 6.3e-31 138.3 99 71.7
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 4.5e-29 132.1 70 91.4
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.6e-26 122.5 62 82.3
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.6e-26 122.5 62 82.3
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.6e-26 122.5 62 82.3
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.6e-26 122.5 62 82.3
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.6e-26 122.5 62 82.3
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.6e-26 122.5 62 82.3
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 6.7e-17 91.7 44 93.2
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.2e-13 80.9 55 70.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 8.5e-12 74.7 49 77.6


User provided reference genes

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