Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 5.2e-107 391.3 241 100.0
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 2.7e-95 352.4 244 89.8
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.7e-94 349.7 245 88.6
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 2.3e-86 322.8 244 85.2
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 6.8e-83 311.2 245 81.6
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 3.4e-82 308.9 236 84.7
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 1.6e-76 290.0 243 81.1
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 4.7e-76 288.5 243 80.7
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 6.2e-76 288.1 245 76.7
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 1.1e-75 287.3 243 80.2
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 3.1e-75 285.8 243 79.8
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 6.8e-75 284.6 243 79.8
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 6.8e-75 284.6 245 76.3
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.5e-74 283.5 244 78.3
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.0e-74 283.1 241 75.5
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 8.4e-73 277.7 244 76.2
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 4.2e-72 275.4 240 77.1
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 2.3e-46 189.9 244 59.4
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 8.2e-44 181.4 190 71.1
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 7.2e-40 168.3 140 85.7
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 3.6e-39 166.0 244 51.6
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 3.6e-39 166.0 229 53.3
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.3e-36 157.5 222 45.9
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.3e-36 157.5 239 45.6
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 1.6e-36 157.1 247 42.5
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.8e-36 156.4 215 46.0
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 4.8e-36 155.6 217 46.5
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 4.8e-36 155.6 215 46.0
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 8.2e-36 154.8 239 43.5
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 8.2e-36 154.8 217 46.1
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 1.1e-35 154.5 251 43.4
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 1.4e-35 154.1 215 45.6
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 4.1e-35 152.5 243 43.6
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.2e-34 151.0 235 43.8
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 1.2e-34 151.0 241 48.1
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 3.4e-34 149.4 220 44.5
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 7.7e-34 148.3 242 43.0
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.3e-33 147.5 237 42.6
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 1.3e-33 147.5 248 41.1
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 1.7e-33 147.1 249 41.4
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 5.0e-33 145.6 244 51.2
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 5.0e-33 145.6 235 51.5
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 6.5e-33 145.2 245 39.6
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 1.1e-32 144.4 252 42.1
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 2.5e-32 143.3 243 41.2
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 4.2e-32 142.5 256 41.4
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 4.2e-32 142.5 226 42.5
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 7.2e-32 141.7 237 40.9
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 1.6e-31 140.6 240 40.8
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 2.1e-31 140.2 243 40.3
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 6.1e-31 138.7 237 42.6
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 6.1e-31 138.7 236 43.2
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.0e-30 137.9 220 41.8
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.3e-30 136.7 214 43.5
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 3.0e-30 136.3 234 39.7
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 6.7e-30 135.2 222 42.8
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 8.8e-30 134.8 246 43.1
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.1e-29 134.4 233 40.8
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 1.1e-29 134.4 232 39.7
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 2.6e-29 133.3 235 39.1
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 5.7e-29 132.1 230 39.1
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.7e-29 132.1 251 41.4
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 7.4e-29 131.7 222 40.5
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 9.7e-29 131.3 237 39.2
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 2.2e-28 130.2 241 44.4
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 4.8e-28 129.0 235 43.0
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 8.2e-28 128.3 231 38.5
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 5.3e-27 125.6 226 40.7
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 5.3e-27 125.6 218 39.4
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 6.9e-27 125.2 217 40.1
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 9.1e-27 124.8 228 39.5
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.2e-26 124.4 237 38.4
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.2e-25 120.2 240 38.8
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 2.2e-25 120.2 223 40.4
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 6.5e-25 118.6 76 78.9
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 8.5e-25 118.2 232 37.9
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 3.2e-24 116.3 217 40.1
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 3.2e-24 116.3 141 53.2
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 3.2e-24 116.3 141 53.2
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 3.2e-24 116.3 209 39.7
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 5.5e-24 115.5 244 40.6
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 7.2e-24 115.2 237 36.3
BcaC01g01787 Brassica carinata HOM05D004667 ORTHO05D032196 1.6e-23 114.0 109 62.4
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 3.6e-23 112.8 233 40.3
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 1.0e-22 111.3 76 75.0
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 1.0e-22 111.3 213 51.6
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 3.0e-22 109.8 235 46.0
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 5.2e-22 109.0 213 51.2
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 6.7e-22 108.6 235 35.7
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.1e-21 107.8 241 32.4
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.1e-21 107.8 236 34.3
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.1e-21 107.8 247 33.2
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.1e-21 107.8 251 32.3
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.5e-21 107.5 230 37.0
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.5e-21 107.5 243 33.7
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 1.5e-21 107.5 213 50.7
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 2.0e-21 107.1 234 36.3
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 4.4e-21 105.9 217 34.6
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 5.7e-21 105.5 237 35.9
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.3e-20 104.4 189 38.1
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 1.3e-20 104.4 170 44.1
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.7e-20 104.0 223 34.5
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.2e-20 103.6 247 33.6
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 2.8e-20 103.2 240 36.7
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 3.7e-20 102.8 259 34.0
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 4.8e-20 102.4 256 34.0
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 4.8e-20 102.4 74 68.9
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 8.2e-20 101.7 234 35.0
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.1e-19 101.3 209 50.7
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.1e-19 101.3 165 40.6
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.1e-19 101.3 159 38.4
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.4e-19 100.9 70 75.7
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 3.1e-19 99.8 246 31.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.1e-19 99.8 106 53.8
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 7.0e-19 98.6 254 33.1
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 9.1e-19 98.2 241 32.0
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.0e-18 97.1 253 31.6
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 2.6e-18 96.7 225 48.9
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 2.6e-18 96.7 218 34.4
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.5e-18 96.3 243 32.1
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.5e-18 96.3 211 47.9
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.5e-18 95.9 250 30.0
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 5.9e-18 95.5 234 33.8
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 5.9e-18 95.5 243 32.1
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 5.9e-18 95.5 211 47.4
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 6.5e-17 92.0 225 31.6
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 6.5e-17 92.0 248 33.1
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 8.5e-17 91.7 232 31.5
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 8.5e-17 91.7 241 32.8
C03p71870 Brassica napus HOM05D004667 ORTHO05D032196 1.1e-16 91.3 85 63.5
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 7.2e-16 88.6 249 28.9
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.2e-15 87.8 254 29.5
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 1.2e-15 87.8 223 31.4
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.2e-15 87.8 242 31.8
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.6e-15 86.3 211 34.6
BolC3t19480H Brassica oleracea HOM05D004667 ORTHO05D032196 8.0e-15 85.1 82 62.2
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 8.0e-15 85.1 216 32.4
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 8.0e-15 85.1 196 35.2
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 8.0e-15 85.1 248 29.8
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.8e-14 84.0 209 38.3
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.0e-14 83.2 223 38.1
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 4.0e-14 82.8 213 41.8
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 5.2e-14 82.4 106 44.3
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 2.0e-13 80.5 224 29.0
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 3.3e-13 79.7 93 46.2
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 7.5e-13 78.6 73 50.7
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 6.3e-12 75.5 76 59.2
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 6.3e-12 75.5 76 59.2
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 2.4e-11 73.6 240 30.0
BcaB03g16837 Brassica carinata HOM05D004667 ORTHO05D005522 4.1e-11 72.8 53 75.5
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 5.3e-11 72.4 60 56.7
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 1.6e-10 70.9 190 36.3
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 7.7e-10 68.6 43 74.4
BolC9t55593H Brassica oleracea HOM05D004667 ORTHO05D005522 3.8e-09 66.2 60 65.0
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 3.8e-09 66.2 60 53.3
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 3.2e-08 63.2 90 37.8
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 4.2e-08 62.8 39 76.9
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 5.5e-08 62.4 58 53.4
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 2.1e-07 60.5 68 42.6
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 3.6e-07 59.7 94 37.2
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 4.7e-07 59.3 68 39.7
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 4.7e-07 59.3 78 37.2
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 6.1e-07 58.9 68 39.7
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 8.0e-07 58.5 68 41.2
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 8.0e-07 58.5 68 38.2
C02p18750 Brassica napus HOM05D003097 ORTHO05D003437 1.4e-06 57.8 68 42.6
BcaNung00768 Brassica carinata HOM05D003097 ORTHO05D003437 1.8e-06 57.4 68 41.2
BcaNung03021 Brassica carinata HOM05D003097 ORTHO05D003437 1.8e-06 57.4 94 36.2
C07p61510 Brassica napus HOM05D003097 ORTHO05D003437 1.8e-06 57.4 94 36.2
BolC7t46575H Brassica oleracea HOM05D003097 ORTHO05D003437 1.8e-06 57.4 94 36.2
BraA03t15471Z Brassica rapa HOM05D003097 ORTHO05D003437 1.8e-06 57.4 94 36.2
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 3.0e-06 56.6 68 39.7
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 3.0e-06 56.6 68 39.7
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 6.8e-06 55.5 84 35.7
QL11p047530 Quercus lobata HOM05D003097 ORTHO05D003437 6.8e-06 55.5 62 41.9


User provided reference genes

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