Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 2.6e-208 728.4 346 100.0
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 3.1e-193 678.3 342 92.4
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 1.1e-185 653.3 348 87.1
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 3.3e-179 631.7 349 86.0
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 1.2e-178 629.8 348 84.8
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 1.4e-177 626.3 349 84.2
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 5.2e-177 624.4 350 83.7
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.7e-175 619.4 345 83.8
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 1.4e-174 616.3 346 83.2
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 1.7e-172 609.4 350 82.3
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 1.1e-171 606.7 347 82.1
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 4.8e-162 574.7 331 81.0
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 9.0e-153 543.9 305 83.3
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 1.2e-141 506.9 351 69.5
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.0e-132 477.2 323 68.7
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 3.3e-131 472.2 339 66.4
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.3e-130 470.3 324 68.5
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.3e-130 470.3 324 68.5
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 8.2e-130 467.6 350 63.1
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 8.2e-130 467.6 342 65.2
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 3.1e-129 465.7 327 67.6
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 5.3e-129 464.9 333 68.8
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 7.7e-128 461.1 325 67.1
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.7e-127 459.9 327 65.7
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 5.0e-127 458.4 344 64.5
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 8.5e-127 457.6 347 64.6
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 8.5e-127 457.6 333 64.0
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 1.4e-126 456.8 344 63.7
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 2.5e-126 456.1 322 66.8
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 4.2e-126 455.3 340 64.7
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 5.5e-126 454.9 327 64.2
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 9.4e-126 454.1 349 64.2
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 9.4e-126 454.1 348 63.8
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.2e-125 453.8 344 63.4
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 1.6e-125 453.4 340 64.1
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 3.6e-125 452.2 350 62.9
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 3.6e-125 452.2 350 62.9
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 3.6e-125 452.2 322 66.5
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.0e-124 450.7 351 63.2
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.8e-124 449.9 321 66.0
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 2.3e-124 449.5 355 59.7
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 1.5e-123 446.8 332 65.4
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 2.6e-123 446.0 327 64.2
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.3e-123 445.7 334 65.3
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 1.3e-122 443.7 320 65.3
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 1.7e-122 443.4 345 61.4
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 1.7e-122 443.4 340 62.6
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 2.2e-122 443.0 350 61.1
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 8.2e-122 441.0 327 63.3
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 1.4e-121 440.3 351 61.0
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 1.4e-121 440.3 343 62.4
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 2.4e-121 439.5 327 64.5
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 2.4e-121 439.5 319 65.2
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 4.1e-121 438.7 328 64.6
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 2.6e-120 436.0 326 62.9
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 3.4e-120 435.6 335 64.2
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 7.7e-120 434.5 322 63.4
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 1.7e-119 433.3 387 55.6
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 2.9e-119 432.6 325 61.8
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 8.5e-119 431.0 323 62.2
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 1.1e-118 430.6 387 55.0
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 2.5e-118 429.5 357 59.1
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.6e-117 426.8 351 59.3
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 6.1e-117 424.9 326 63.8
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 3.0e-116 422.5 338 59.8
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.0e-116 422.5 334 62.6
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 5.2e-116 421.8 351 58.4
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 1.1e-115 420.6 361 56.0
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 9.7e-115 417.5 366 56.0
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 1.3e-114 417.2 332 59.6
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 2.2e-114 416.4 350 59.7
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.8e-114 416.0 317 62.5
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.8e-114 416.0 317 62.5
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 4.8e-114 415.2 336 59.2
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 4.8e-114 415.2 346 59.8
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 4.8e-114 415.2 309 64.4
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 6.3e-114 414.8 402 54.2
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 8.2e-114 414.5 352 56.8
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 5.3e-105 385.2 361 54.6
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 3.8e-103 379.0 325 54.8
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 8.5e-103 377.9 342 57.0
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 1.1e-102 377.5 350 53.1
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 1.5e-102 377.1 275 64.4
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 3.6e-101 372.5 275 64.4
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 6.1e-101 371.7 333 56.2
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 1.4e-100 370.5 283 63.3
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 6.8e-100 368.2 283 61.8
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 8.8e-100 367.9 349 52.4
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 2.0e-99 366.7 277 61.7
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 1.4e-97 360.5 280 62.1
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 9.2e-89 331.3 283 57.6
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.1e-86 324.3 273 58.6
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 4.1e-81 305.8 275 61.5
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 4.7e-77 292.4 248 56.5
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 1.3e-58 231.1 156 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.6e-56 224.2 277 43.7
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 3.0e-55 219.9 145 67.6
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 1.6e-48 197.6 346 37.0
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 1.0e-47 194.9 187 52.9
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 5.1e-47 192.6 137 65.0
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 4.8e-45 186.0 140 62.1
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 2.1e-40 170.6 299 34.8
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 3.4e-35 153.3 107 66.4
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 3.4e-35 153.3 326 32.8
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 3.0e-31 140.2 487 24.4
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 8.2e-29 132.1 75 77.3
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 2.2e-18 97.4 68 67.6
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.5e-14 84.7 77 51.9
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 7.4e-14 82.4 45 77.8
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 9.7e-14 82.0 53 71.7
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 3.7e-13 80.1 275 25.1
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.4e-12 78.2 263 27.8
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 3.1e-12 77.0 317 25.6
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 4.1e-12 76.6 269 24.5
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 4.1e-12 76.6 304 24.3
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 1.2e-11 75.1 321 24.6
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 1.2e-11 75.1 95 44.2
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 2.6e-11 73.9 291 25.1
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 2.6e-11 73.9 104 37.5
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.6e-11 73.9 198 29.8
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 2.6e-11 73.9 295 24.7
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 3.4e-11 73.6 295 24.7
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 4.5e-11 73.2 269 24.2
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 5.9e-11 72.8 296 25.7
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 7.7e-11 72.4 289 25.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 7.7e-11 72.4 270 24.8
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.0e-10 72.0 271 25.5
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 2.9e-10 70.5 296 25.0
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 8.5e-10 68.9 284 24.6
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 1.1e-09 68.6 269 26.0
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 1.4e-09 68.2 291 24.7
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 1.9e-09 67.8 275 22.5
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 2.5e-09 67.4 191 28.3
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 3.2e-09 67.0 279 22.9
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.2e-09 66.6 93 40.9
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 2.1e-08 64.3 278 24.1
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 3.6e-08 63.5 297 21.5
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 6.1e-08 62.8 298 24.5
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 3.9e-07 60.1 280 22.1
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.1e-06 58.5 140 26.4
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.1e-06 58.5 36 69.4
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 2.0e-06 57.8 199 25.1
MCO01G020 Micromonas commoda HOM05D004419 ORTHO05D005480 3.3e-06 57.0 262 24.0
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 9.7e-06 55.5 180 27.2


User provided reference genes

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