Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G44620 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 5.7e-138 494.2 240 100.0
Carub.0015s0017 Capsella rubella HOM05D006649 ORTHO05D008754 1.8e-120 436.0 235 91.5
Carub.0005s1026 Capsella rubella HOM05D006649 ORTHO05D008754 1.0e-115 420.2 240 87.5
CARHR151530 Cardamine hirsuta HOM05D006649 ORTHO05D008754 3.5e-111 405.2 236 87.3
BcaC01g02065 Brassica carinata HOM05D006649 ORTHO05D008754 1.2e-106 390.2 233 85.4
C03p69000 Brassica napus HOM05D006649 ORTHO05D008754 1.2e-106 390.2 233 85.4
BolC3t19153H Brassica oleracea HOM05D006649 ORTHO05D008754 1.2e-106 390.2 233 85.4
A06p21790 Brassica napus HOM05D006649 ORTHO05D008754 1.1e-104 383.6 234 85.0
BcaB01g01150 Brassica carinata HOM05D006649 ORTHO05D008754 2.4e-104 382.5 242 82.6
Sp5g16580 Schrenkiella parvula HOM05D006649 ORTHO05D008754 4.1e-104 381.7 242 81.8
BraA06t25266Z Brassica rapa HOM05D006649 ORTHO05D008754 3.5e-103 378.6 234 84.6
Aa31LG4G14340 Aethionema arabicum HOM05D006649 ORTHO05D008754 5.7e-98 361.3 283 68.9
Carub.0015s0012 Capsella rubella HOM05D006649 ORTHO05D008754 1.3e-94 350.1 174 97.1
THA.LOC104810902 Tarenaya hassleriana HOM05D006649 ORTHO05D008754 9.5e-93 344.0 239 71.5
Thecc.09G288800 Theobroma cacao HOM05D006649 ORTHO05D008754 5.2e-83 311.6 242 64.5
Prupe.6G122700 Prunus persica HOM05D006649 ORTHO05D008754 2.4e-80 302.8 246 65.0
PGR119G1752 Punica granatum HOM05D006649 ORTHO05D008754 3.2e-80 302.4 242 65.7
MD11G1159700 Malus domestica HOM05D006649 ORTHO05D008754 4.1e-80 302.0 246 63.0
Gorai.009G087400 Gossypium raimondii HOM05D000146 ORTHO05D000178 9.2e-80 300.8 240 63.8
Gohir.D05G085700 Gossypium hirsutum HOM05D006649 ORTHO05D008754 1.6e-79 300.1 240 63.8
Rhsim13G0107300 Rhododendron simsii HOM05D006649 ORTHO05D008754 1.3e-78 297.0 230 66.5
QL01p013359 Quercus lobata HOM05D006649 ORTHO05D008754 1.7e-78 296.6 179 78.8
vmacro03292 Vaccinium macrocarpon HOM05D006649 ORTHO05D008754 3.9e-78 295.4 250 62.8
AUR62009801 Chenopodium quinoa HOM05D006649 ORTHO05D008754 6.6e-78 294.7 245 63.3
Haze_23431 Corylus avellana HOM05D006649 ORTHO05D008754 1.9e-77 293.1 179 77.1
FAN25G2701 Fragaria x ananassa HOM05D006649 ORTHO05D008754 1.9e-77 293.1 179 78.8
TWI79G0266 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 2.5e-77 292.7 240 63.3
TWI79G0985 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 2.5e-77 292.7 240 63.3
Gohir.A05G082800 Gossypium hirsutum HOM05D006649 ORTHO05D008754 3.3e-77 292.4 241 62.2
Atru.chr3.3344 Acer truncatum HOM05D006649 ORTHO05D008754 7.3e-77 291.2 238 63.4
Cfa010067 Carpinus fangiana HOM05D006649 ORTHO05D008754 9.5e-77 290.8 179 77.1
RcHm_v2.0_Chr5g0043851 Rosa chinensis HOM05D006649 ORTHO05D008754 2.1e-76 289.7 179 77.7
AUR62039249 Chenopodium quinoa HOM05D006649 ORTHO05D008754 3.6e-76 288.9 171 79.5
Nn6g35002 Nelumbo nucifera HOM05D006649 ORTHO05D008754 3.6e-76 288.9 212 67.9
Duzib170G0763 Durio zibethinus HOM05D006649 ORTHO05D008754 4.7e-76 288.5 268 57.1
Lj3g0022718 Lotus japonicus HOM05D006649 ORTHO05D008754 4.7e-76 288.5 227 65.2
Hund20864 Selenicereus undatus HOM05D006649 ORTHO05D008754 4.7e-76 288.5 180 76.1
Manes.11G159300 Manihot esculenta HOM05D006649 ORTHO05D008754 8.1e-76 287.7 239 62.3
Psat7g189840 Pisum sativum HOM05D006649 ORTHO05D008754 1.4e-75 287.0 234 63.7
EL10Ac7g15785 Beta vulgaris HOM05D006649 ORTHO05D008754 1.8e-75 286.6 229 63.8
Eucgr.J00458 Eucalyptus grandis HOM05D006649 ORTHO05D008754 1.8e-75 286.6 164 81.7
CiPaw.13G139500 Carya illinoinensis HOM05D006649 ORTHO05D008754 2.3e-75 286.2 179 76.0
TAR633G2780 Trochodendron aralioides HOM05D006649 ORTHO05D008754 2.3e-75 286.2 224 65.6
Nn2g14062 Nelumbo nucifera HOM05D006649 ORTHO05D008754 3.1e-75 285.8 171 78.9
Potri.009G146800 Populus trichocarpa HOM05D006649 ORTHO05D008754 3.1e-75 285.8 239 62.3
Potri.004G186400 Populus trichocarpa HOM05D006649 ORTHO05D008754 6.8e-75 284.6 237 62.4
Lalb_Chr19g0136681 Lupinus albus HOM05D006649 ORTHO05D008754 1.2e-74 283.9 227 64.3
Nitab4.5_0009861g0020 Nicotiana tabacum HOM05D006649 ORTHO05D008754 3.4e-74 282.3 238 62.2
Sc21g0004770 Simmondsia chinensis HOM05D006649 ORTHO05D008754 3.4e-74 282.3 202 67.3
PSO384G2883 Papaver somniferum HOM05D006649 ORTHO05D008754 4.4e-74 282.0 238 63.4
Sabra09G0115900 Salix brachista HOM05D006649 ORTHO05D008754 4.4e-74 282.0 234 61.5
GSVIVG01031373001 Vitis vinifera HOM05D006649 ORTHO05D008754 4.4e-74 282.0 172 76.2
Solyc11g067060.3 Solanum lycopersicum HOM05D006649 ORTHO05D008754 7.5e-74 281.2 237 61.6
Hma1.2p1_0695F.1_g204540 Hydrangea macrophylla HOM05D006649 ORTHO05D008754 1.3e-73 280.4 204 67.6
Oeu035544.1 Olea europaea HOM05D006649 ORTHO05D008754 1.3e-73 280.4 180 73.3
Actinidia24190 Actinidia chinensis HOM05D006649 ORTHO05D008754 2.9e-73 279.3 166 80.1
SGA_v2.0_scaffold147G36353 Striga asiatica HOM05D006649 ORTHO05D008754 2.9e-73 279.3 233 60.9
VMungo1127G2203 Vigna mungo HOM05D006649 ORTHO05D008754 2.9e-73 279.3 203 67.5
CsaV3_6G014840 Cucumis sativus L. HOM05D006649 ORTHO05D008754 3.7e-73 278.9 234 63.2
Glyma.12G086800 Glycine max HOM05D006649 ORTHO05D008754 6.4e-73 278.1 203 69.0
Manes.04G006800 Manihot esculenta HOM05D006649 ORTHO05D008754 1.1e-72 277.3 199 67.8
PSO339G3959 Papaver somniferum HOM05D006649 ORTHO05D008754 1.1e-72 277.3 177 76.3
Lj2A991T88 Lonicera japonica HOM05D006649 ORTHO05D008754 1.4e-72 276.9 212 68.9
CAN.G644.11 Capsicum annuum HOM05D006649 ORTHO05D008754 2.4e-72 276.2 241 60.2
TPR.G15571 Trifolium pratense HOM05D006649 ORTHO05D008754 3.2e-72 275.8 181 73.5
HanXRQChr01g0019741 Helianthus annuus HOM05D006649 ORTHO05D008754 4.1e-72 275.4 235 60.0
arahy.Tifrunner.gnm1.ann1.AS0IPM Arachis hypogaea HOM05D006649 ORTHO05D008754 5.4e-72 275.0 240 60.4
arahy.Tifrunner.gnm1.ann1.WDN5HE Arachis hypogaea HOM05D006649 ORTHO05D008754 5.4e-72 275.0 240 60.4
Phvul.011G091000 Phaseolus vulgaris HOM05D006649 ORTHO05D008754 5.4e-72 275.0 203 66.0
Ca_19382_v3 Cicer arietinum L. HOM05D006649 ORTHO05D008754 7.1e-72 274.6 232 62.9
Cc01_g09580 Coffea canephora HOM05D006649 ORTHO05D008754 7.1e-72 274.6 179 73.7
Lsat_1_v5_gn_1_62060 Lactuca sativa HOM05D006649 ORTHO05D008754 7.1e-72 274.6 232 63.4
Glyma.11G187700 Glycine max HOM05D006649 ORTHO05D008754 2.1e-71 273.1 177 74.6
Sopen11g026770 Solanum pennellii HOM05D006649 ORTHO05D008754 3.5e-71 272.3 168 76.8
Medtr4g055030 Medicago truncatula HOM05D006649 ORTHO05D008754 7.8e-71 271.2 177 74.0
Sabra04G0125600 Salix brachista HOM05D006649 ORTHO05D008754 1.3e-70 270.4 167 76.6
COL.COLO4_19946 Corchorus olitorius HOM05D000146 ORTHO05D000178 3.9e-70 268.9 155 81.3
PGSC0003DMG400026546 Solanum tuberosum HOM05D006649 ORTHO05D008754 3.9e-70 268.9 166 76.5
Migut.N02505 Erythranthe guttata HOM05D006649 ORTHO05D008754 6.6e-70 268.1 238 56.3
SalBow6G0396 Salvia bowleyana HOM05D006649 ORTHO05D008754 6.6e-70 268.1 216 62.0
DCAR_006154 Daucus carota HOM05D006649 ORTHO05D008754 8.6e-70 267.7 175 73.1
CANSAT54G3044 Cannabis sativa HOM05D006649 ORTHO05D008754 7.3e-69 264.6 165 73.9
Os08g0557400 Oryza sativa ssp. japonica HOM05D006649 ORTHO05D008754 2.1e-68 263.1 170 71.8
ATR0820G177 Amborella trichopoda HOM05D006649 ORTHO05D008754 3.6e-68 262.3 171 72.5
unitig_8.g3286 Utricularia gibba HOM05D006649 ORTHO05D008754 1.8e-67 260.0 241 53.9
CSS0006150 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 3.1e-67 259.2 180 71.7
HPP92_013801 Vanilla planifolia HOM05D006649 ORTHO05D008754 4.1e-64 248.8 168 69.0
Pp3c2_15060 Physcomitrium patens HOM05D006649 ORTHO05D008754 7.1e-64 248.1 167 68.9
CBR_g29713 Chara braunii HOM05D006649 ORTHO05D008754 1.7e-62 243.4 176 65.9
Nitab4.5_0006735g0030 Nicotiana tabacum HOM05D006649 ORTHO05D008754 6.6e-62 241.5 159 73.0
Mapoly0056s0130 Marchantia polymorpha HOM05D006649 ORTHO05D008754 1.6e-60 236.9 169 62.7
TPR.G9708 Trifolium pratense HOM05D006649 ORTHO05D008754 1.6e-60 236.9 182 65.9
SMO356G0095 Selaginella moellendorffii HOM05D006649 ORTHO05D008754 3.6e-60 235.7 179 65.4
AL5G22830 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 1.4e-59 233.8 116 96.6
AL5G22760 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 5.2e-59 231.9 116 95.7
Thhalv10002731m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 2.6e-58 229.6 116 94.0
Actinidia07225 Actinidia chinensis HOM05D006649 ORTHO05D008754 3.8e-57 225.7 192 60.9
CDE08G1146 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 3.2e-56 222.6 234 54.7
CSS0022960 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 1.2e-55 220.7 178 62.9
MELO3C021441.2 Cucumis melo HOM05D006649 ORTHO05D008754 1.0e-54 217.6 210 56.7
FvH4_3g24360 Fragaria vesca HOM05D006649 ORTHO05D008754 5.3e-51 205.3 132 75.8
ClCG02G022010 Citrullus lanatus HOM05D006649 ORTHO05D008754 2.0e-50 203.4 183 59.6
Zm00001eb339600 Zea mays HOM05D006649 ORTHO05D008754 5.4e-48 195.3 131 69.5
Peaxi162Scf01284g00017 Petunia axillaris HOM05D006649 ORTHO05D008754 8.7e-46 188.0 218 51.8
Zm00001eb382760 Zea mays HOM05D006649 ORTHO05D008754 9.6e-45 184.5 126 68.3
Ah.15g095620 Amaranthus hybridus HOM05D006649 ORTHO05D008754 3.7e-44 182.6 117 73.5
Duzib168G0232 Durio zibethinus HOM05D006649 ORTHO05D008754 3.2e-40 169.5 110 75.5
SEGI_31986 Sequoiadendron giganteum HOM05D006649 ORTHO05D008754 7.1e-40 168.3 109 73.4
PRCOL_00004711 Prasinoderma coloniale HOM05D006649 ORTHO05D008754 9.3e-40 167.9 177 46.9
Dinv29440 Davidia involucrata HOM05D006649 ORTHO05D008754 1.6e-39 167.2 110 73.6
Thhalv10003008m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 6.0e-39 165.2 132 70.5
Cre14.g632767 Chlamydomonas reinhardtii HOM05D006649 ORTHO05D008754 1.5e-37 160.6 178 47.8
Sed0010741 Sechium edule HOM05D006649 ORTHO05D008754 1.9e-37 160.2 110 73.6
Zm00001eb039610 Zea mays HOM05D006649 ORTHO05D008754 7.4e-37 158.3 108 70.4
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 5.7e-21 105.5 153 41.2
Mapoly0054s0048 Marchantia polymorpha HOM05D006649 ORTHO05D023509 7.2e-16 88.6 195 29.2
CDE06G0522 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 1.2e-15 87.8 52 78.8
Pp3c1_29030 Physcomitrium patens HOM05D006649 ORTHO05D023509 5.1e-14 82.4 199 29.1
CBR_g19487 Chara braunii HOM05D006649 ORTHO05D023509 6.7e-14 82.0 167 29.9
GSVIVG01023086001 Vitis vinifera HOM05D006649 ORTHO05D008754 1.5e-10 70.9 67 52.2
AT3G44485 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 2.2e-09 67.0 60 60.0


User provided reference genes

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