Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 0.0e+00 1657.5 954 100.0
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 0.0e+00 1558.9 953 92.1
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 0.0e+00 1475.7 955 82.6
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 0.0e+00 1453.3 956 87.6
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 0.0e+00 1377.5 957 83.1
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 0.0e+00 1373.2 956 83.5
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 0.0e+00 1373.2 956 83.5
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 0.0e+00 1306.2 956 79.3
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 0.0e+00 1297.7 956 78.7
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 0.0e+00 1295.4 956 78.6
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 0.0e+00 1295.4 956 78.8
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 0.0e+00 1291.6 957 78.5
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 0.0e+00 1270.4 956 77.8
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 0.0e+00 1234.2 957 75.9
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 4.3e-306 1054.7 954 67.7
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 8.5e-278 960.7 979 56.1
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 2.1e-276 956.1 979 55.4
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 3.0e-275 952.2 961 61.0
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 1.5e-274 949.9 910 58.6
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 4.4e-274 948.3 956 61.2
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 4.4e-274 948.3 913 58.1
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.1e-272 943.7 955 61.7
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 5.3e-272 941.4 959 61.6
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 9.1e-272 940.6 953 60.8
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 2.9e-270 935.6 916 63.0
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 3.8e-270 935.3 907 62.3
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 1.1e-269 933.7 958 60.0
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.0e-267 927.2 955 61.3
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 6.7e-267 924.5 969 57.8
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 2.6e-266 922.5 962 54.5
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 2.6e-266 922.5 967 53.4
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 3.3e-266 922.2 1057 51.5
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 4.4e-266 921.8 967 60.3
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 9.7e-266 920.6 962 60.0
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 2.2e-265 919.5 956 56.3
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 7.0e-264 914.4 961 55.3
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 9.1e-264 914.1 914 60.8
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 1.3e-262 910.2 955 53.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 1.7e-262 909.8 980 57.2
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 5.0e-262 908.3 955 60.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 2.5e-261 906.0 977 53.7
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 3.2e-261 905.6 965 53.8
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 3.2e-261 905.6 973 58.7
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 5.5e-261 904.8 966 58.8
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 5.5e-261 904.8 964 59.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 8.8e-259 897.5 956 54.8
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 8.8e-259 897.5 953 53.7
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 8.8e-259 897.5 957 59.4
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 3.4e-258 895.6 954 55.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 5.7e-258 894.8 978 53.8
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.3e-257 893.6 969 58.1
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 4.8e-257 891.7 954 58.0
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 1.4e-256 890.2 980 51.2
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 1.8e-256 889.8 980 53.7
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 3.1e-256 889.0 896 56.2
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 5.4e-256 888.3 898 56.2
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 5.4e-256 888.3 967 57.5
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 2.0e-255 886.3 957 53.9
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 4.5e-255 885.2 957 53.6
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 6.6e-254 881.3 958 57.7
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 6.6e-254 881.3 970 58.8
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 8.6e-254 880.9 896 55.8
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.6e-252 876.7 908 59.0
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.6e-252 875.5 978 56.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 6.1e-252 874.8 960 57.5
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 5.2e-251 871.7 965 57.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 6.8e-251 871.3 978 56.4
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.6e-250 869.4 956 53.7
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 2.6e-250 869.4 895 54.5
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 4.4e-250 868.6 975 53.0
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 5.7e-250 868.2 981 54.6
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 1.7e-249 866.7 973 52.3
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 6.3e-249 864.8 957 53.0
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 8.3e-249 864.4 969 56.9
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 1.8e-248 863.2 961 52.8
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.0e-247 859.8 955 50.7
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 2.9e-246 855.9 969 58.1
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 3.9e-246 855.5 973 51.8
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 1.5e-245 853.6 957 54.5
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.8e-243 846.7 895 52.3
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 1.8e-243 846.7 962 53.0
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 3.1e-243 845.9 967 50.4
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 4.0e-243 845.5 967 56.5
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 8.9e-243 844.3 938 52.2
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 2.6e-242 842.8 1004 50.7
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 2.2e-241 839.7 933 53.2
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 2.9e-241 839.3 977 55.1
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 3.2e-240 835.9 959 52.3
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.7e-239 832.8 979 51.4
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.7e-239 832.8 986 51.2
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 3.3e-237 825.9 964 52.2
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 9.5e-237 824.3 928 53.2
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 1.1e-227 794.3 954 52.3
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.1e-227 794.3 924 51.5
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 4.4e-226 788.9 956 48.2
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.6e-223 780.4 976 54.5
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 1.7e-222 776.9 978 49.8
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 7.3e-221 771.5 933 49.3
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 1.1e-211 741.1 815 52.9
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 4.8e-196 689.1 781 50.8
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 1.7e-193 680.6 844 49.5
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 1.8e-190 670.6 797 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 1.1e-157 561.6 845 42.4
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 9.7e-157 558.5 928 45.6
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 4.7e-143 513.1 607 55.4
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 5.0e-137 493.0 830 44.8
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 8.1e-119 432.6 459 50.1
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 8.1e-111 406.0 818 35.1
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.0e-109 401.4 455 49.5
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 7.1e-107 392.9 509 47.0
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.3e-79 302.4 884 30.5
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 5.5e-75 287.0 791 30.1
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 3.5e-66 257.7 369 43.9
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.7e-60 238.8 895 24.5
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.2e-44 185.3 351 38.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 4.2e-43 181.0 172 55.8
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 2.9e-36 158.3 219 41.6
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 5.0e-36 157.5 221 42.1
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 8.5e-28 130.2 90 71.1
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 4.2e-27 127.9 90 70.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 7.5e-24 117.1 90 68.9
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 1.7e-23 115.9 90 67.8
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 1.9e-19 102.4 82 64.6
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.3e-17 95.5 67 64.2
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 5.9e-13 80.9 68 63.2
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 2.5e-11 75.5 118 43.2
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.5e-08 66.2 157 30.6
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.4e-06 58.9 35 80.0
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 9.2e-06 57.0 190 29.5


User provided reference genes

Program Settings