Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.3e-191 672.9 345 100.0
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.2e-186 656.4 345 97.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 5.4e-182 641.0 345 94.8
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.2e-176 623.2 345 93.3
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.5e-176 622.9 345 93.0
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 2.5e-171 605.5 345 90.4
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 7.3e-171 604.0 345 90.1
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 2.1e-170 602.4 345 90.7
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 3.6e-170 601.7 345 90.1
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 4.7e-170 601.3 345 90.1
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.6e-168 595.5 345 89.0
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 9.9e-168 593.6 344 88.4
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.2e-162 576.6 329 91.2
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 1.3e-151 540.0 349 82.2
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 5.5e-142 508.1 345 75.9
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 2.8e-138 495.7 347 73.2
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 2.4e-137 492.7 340 75.0
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.5e-136 490.0 321 77.9
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.5e-136 490.0 339 74.6
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 2.6e-136 489.2 335 75.2
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.8e-136 488.0 337 73.6
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 1.3e-135 486.9 291 83.2
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 1.7e-135 486.5 289 83.7
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.7e-135 486.5 316 78.5
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.8e-135 485.3 330 75.5
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.5e-135 484.6 338 73.7
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 8.4e-135 484.2 313 79.9
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 8.4e-135 484.2 340 73.2
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 8.4e-135 484.2 351 71.8
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.4e-134 483.4 291 83.2
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.9e-134 483.0 320 77.8
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 2.5e-134 482.6 301 80.1
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 3.2e-134 482.3 293 81.6
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 4.2e-134 481.9 305 79.7
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 4.2e-134 481.9 346 73.4
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.2e-134 481.9 300 79.7
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.2e-134 481.9 338 73.7
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 7.1e-134 481.1 308 77.6
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 7.1e-134 481.1 291 81.4
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 9.3e-134 480.7 344 73.5
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.2e-133 480.3 342 72.5
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.6e-133 479.9 340 71.8
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.6e-133 479.9 300 80.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.7e-133 479.2 345 72.2
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 3.5e-133 478.8 340 71.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 4.6e-133 478.4 307 78.5
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 4.6e-133 478.4 289 81.7
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 6.0e-133 478.0 291 82.8
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 7.9e-133 477.6 282 83.3
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.3e-132 476.9 278 83.5
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.8e-132 476.5 295 80.7
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 2.3e-132 476.1 306 78.4
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 3.0e-132 475.7 291 81.8
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 3.0e-132 475.7 291 81.8
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.9e-132 475.3 300 80.0
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 3.9e-132 475.3 306 79.1
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 1.1e-131 473.8 302 77.5
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.1e-131 473.8 307 80.1
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.1e-131 473.8 302 77.8
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.5e-131 473.4 297 77.1
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.5e-131 473.4 290 83.1
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.5e-131 472.6 297 76.8
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.5e-131 472.6 292 80.1
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 7.4e-131 471.1 313 78.0
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.3e-130 470.3 268 85.4
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 2.1e-130 469.5 278 82.7
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 2.8e-130 469.2 284 82.0
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 2.8e-130 469.2 341 71.3
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 2.8e-130 469.2 291 78.7
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.7e-130 468.8 298 76.5
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 8.2e-130 467.6 321 75.4
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.1e-129 467.2 283 81.6
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 1.4e-129 466.8 278 82.4
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 2.4e-129 466.1 275 82.5
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 2.0e-128 463.0 300 75.7
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.0e-128 463.0 304 77.6
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 5.9e-128 461.5 304 77.0
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.3e-127 460.3 298 76.5
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.7e-127 459.9 295 77.6
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 2.9e-127 459.1 290 77.2
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 2.1e-125 453.0 289 77.2
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 2.1e-125 453.0 289 78.2
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 3.6e-125 452.2 275 82.2
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.0e-124 450.7 290 77.6
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 2.3e-124 449.5 257 91.8
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.9e-123 446.4 282 78.0
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.9e-123 446.4 265 82.3
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 3.1e-121 439.1 380 62.6
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 9.1e-121 437.6 269 77.7
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.5e-120 436.8 300 72.7
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 5.0e-119 431.8 303 72.6
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 6.5e-119 431.4 296 74.3
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 7.2e-118 427.9 294 76.2
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.1e-116 421.8 262 80.2
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 7.0e-105 384.8 273 74.0
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.2e-104 384.0 295 68.1
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.0e-103 380.9 211 90.0
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.2e-102 375.6 237 80.2
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.7e-101 372.1 250 74.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-99 367.5 235 78.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.1e-97 360.9 235 76.6
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.4e-97 360.5 275 64.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 2.2e-95 353.2 250 73.2
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.5e-95 351.7 244 75.0
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 4.2e-94 349.0 258 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 4.4e-91 339.0 207 77.8
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.7e-90 337.0 254 68.1
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.2e-90 336.7 212 78.3
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.5e-88 328.9 220 75.5
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.9e-80 302.0 276 60.1
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 5.2e-76 288.9 263 52.9
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.3e-71 274.2 159 84.9
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 8.0e-69 265.0 196 68.4
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 7.3e-62 241.9 207 61.8
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.9e-55 219.5 159 71.1
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.8e-52 210.7 317 40.4
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 3.4e-51 206.5 288 44.1
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 4.4e-51 206.1 120 83.3
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 8.4e-50 201.8 121 81.8
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.0e-47 194.9 118 83.1
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.0e-47 194.9 116 83.6
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 4.3e-46 189.5 128 75.0
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.6e-45 187.6 223 48.9
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 5.3e-36 156.0 301 37.5
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 2.1e-32 144.1 231 40.3
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.8e-31 141.0 76 89.5
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.8e-28 131.0 76 84.2
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 4.5e-27 126.3 63 93.7
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 4.5e-27 126.3 288 33.0
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 5.5e-25 119.4 73 76.7
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 6.0e-24 115.9 91 64.8
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.9e-23 113.2 303 30.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 2.0e-19 100.9 81 69.1
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.0e-19 100.9 121 47.9
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 2.2e-18 97.4 77 68.8
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 8.2e-13 79.0 134 38.8
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 2.9e-10 70.5 52 73.1
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 7.2e-09 65.9 40 80.0
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.1e-06 58.5 59 55.9
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.9e-06 57.8 97 36.1


User provided reference genes

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