Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 5.4e-170 600.9 302 100.0
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 2.6e-164 582.0 301 96.3
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 1.1e-157 560.1 302 92.7
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 1.4e-157 559.7 300 92.0
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 1.9e-146 522.7 303 86.8
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 2.3e-144 515.8 304 84.9
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 8.7e-144 513.8 306 85.0
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 1.5e-143 513.1 306 85.0
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 7.4e-143 510.8 304 83.9
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 7.4e-143 510.8 304 83.9
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 9.6e-143 510.4 306 84.0
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 9.6e-143 510.4 306 84.0
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 3.7e-142 508.4 307 84.7
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 1.1e-141 506.9 304 83.9
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 3.1e-141 505.4 304 83.6
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 3.1e-141 505.4 307 84.4
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.9e-131 472.2 295 80.7
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 1.4e-130 469.9 304 78.9
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.1e-125 453.8 309 73.1
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 3.3e-119 432.2 307 73.6
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 5.9e-108 394.8 312 66.3
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.0e-107 394.0 311 65.9
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 6.5e-107 391.3 310 65.8
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 1.9e-106 389.8 289 69.6
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 5.5e-106 388.3 301 67.4
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 7.2e-106 387.9 295 67.8
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 9.4e-106 387.5 300 66.3
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.1e-105 386.3 306 65.7
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 8.0e-105 384.4 304 65.5
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 8.0e-105 384.4 299 67.6
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 1.0e-104 384.0 292 68.2
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 1.8e-104 383.3 306 65.0
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 1.8e-104 383.3 301 66.1
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 4.0e-104 382.1 280 70.4
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 6.7e-104 381.3 310 64.8
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 6.7e-104 381.3 301 65.8
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 8.8e-104 380.9 302 66.6
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 8.8e-104 380.9 301 65.8
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 1.5e-103 380.2 267 70.8
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 2.0e-103 379.8 267 70.8
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 2.6e-103 379.4 302 63.9
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 3.3e-103 379.0 249 75.5
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 4.4e-103 378.6 272 69.5
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 4.4e-103 378.6 298 65.1
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 4.4e-103 378.6 266 70.7
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 5.7e-103 378.3 302 65.9
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 5.7e-103 378.3 274 68.2
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 1.7e-102 376.7 304 65.1
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 2.8e-102 375.9 252 74.2
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 6.3e-102 374.8 306 64.4
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.4e-101 373.6 300 66.0
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.4e-101 373.6 318 62.3
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 1.4e-101 373.6 296 64.9
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 3.1e-101 372.5 248 73.0
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 3.1e-101 372.5 276 70.3
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 3.1e-101 372.5 302 64.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 3.1e-101 372.5 300 66.3
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 4.1e-101 372.1 308 63.0
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 9.1e-101 370.9 285 66.3
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 1.2e-100 370.5 281 65.8
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 1.6e-100 370.2 290 65.9
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 1.6e-100 370.2 307 62.5
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 2.0e-100 369.8 314 64.0
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 3.5e-100 369.0 272 69.9
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 4.5e-100 368.6 287 66.6
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.3e-99 367.1 239 74.1
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 2.9e-99 365.9 240 75.4
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 2.9e-99 365.9 284 66.2
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 3.8e-99 365.5 304 63.5
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 3.8e-99 365.5 280 66.8
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 6.5e-99 364.8 242 74.0
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 1.1e-98 364.0 309 62.5
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 5.5e-98 361.7 297 64.0
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 5.5e-98 361.7 263 67.7
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 7.2e-98 361.3 268 68.3
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 1.2e-97 360.5 260 70.4
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 1.2e-97 360.5 258 69.8
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 2.7e-97 359.4 289 64.0
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 3.6e-97 359.0 287 64.1
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 3.6e-97 359.0 259 68.7
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 6.1e-97 358.2 259 69.5
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 8.0e-97 357.8 245 72.2
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 8.0e-97 357.8 268 68.3
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 4.0e-96 355.5 251 68.1
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.2e-95 354.0 273 65.9
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 7.5e-95 351.3 293 63.8
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 9.8e-95 350.9 273 65.9
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 2.4e-93 346.3 265 64.9
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 5.9e-92 341.7 240 71.7
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 1.3e-91 340.5 240 67.9
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 8.5e-91 337.8 223 74.9
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 1.8e-88 330.1 242 69.0
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 5.2e-88 328.6 309 60.5
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 2.0e-87 326.6 216 75.0
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 9.8e-87 324.3 213 74.6
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.1e-85 320.9 228 71.5
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 8.6e-83 311.2 255 62.4
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 1.6e-81 307.0 253 64.0
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 5.2e-80 302.0 239 66.1
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 2.0e-79 300.1 246 61.8
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 1.3e-78 297.4 315 55.6
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 8.3e-78 294.7 219 69.4
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 3.2e-77 292.7 219 69.4
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 4.1e-77 292.4 219 68.9
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 5.9e-76 288.5 225 65.3
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 5.0e-75 285.4 204 70.6
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 5.8e-71 271.9 246 56.9
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 6.4e-70 268.5 189 72.5
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 1.4e-69 267.3 219 64.4
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.7e-67 260.4 304 50.0
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 3.4e-63 246.1 179 70.9
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 7.8e-60 235.0 251 52.2
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 2.8e-57 226.5 292 46.2
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 4.4e-47 192.6 135 70.4
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 9.6e-42 174.9 117 70.9
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 2.1e-36 157.1 115 68.7
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 2.9e-30 136.7 112 59.8
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 9.3e-29 131.7 95 64.2
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.2e-28 131.3 82 75.6
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.0e-22 111.7 85 63.5
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.7e-22 110.9 85 64.7
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 9.6e-18 95.1 64 78.1
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 2.5e-10 70.5 48 70.8


User provided reference genes

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