Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 1.8e-226 788.9 384 100.0
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 3.6e-211 738.0 383 93.2
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 9.2e-199 696.8 387 89.4
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 1.4e-170 603.2 380 78.2
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 9.0e-170 600.5 388 76.3
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 6.4e-168 594.3 384 77.3
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 7.6e-161 570.9 384 76.0
Aa31LG8G11920 Aethionema arabicum HOM05D007853 ORTHO05D009873 5.5e-159 564.7 386 73.6
THA.LOC104804604 Tarenaya hassleriana HOM05D007853 ORTHO05D009873 1.3e-157 560.1 380 73.7
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 8.2e-155 550.8 384 74.5
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 8.2e-155 550.8 384 74.5
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 1.3e-152 543.5 382 74.3
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 1.4e-151 540.0 385 74.0
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 1.4e-151 540.0 385 74.0
Thecc.01G228200 Theobroma cacao HOM05D007853 ORTHO05D009873 3.5e-129 465.7 382 62.0
Duzib133G0551 Durio zibethinus HOM05D007853 ORTHO05D009873 2.7e-126 456.1 382 61.3
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 3.0e-125 452.6 375 62.1
Gohir.A11G136300 Gossypium hirsutum HOM05D007853 ORTHO05D009873 1.8e-122 443.4 382 59.9
Gohir.D11G142600 Gossypium hirsutum HOM05D007853 ORTHO05D009873 1.2e-121 440.7 381 59.8
Gorai.007G152900 Gossypium raimondii HOM05D007853 ORTHO05D009873 1.2e-121 440.7 381 59.8
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 6.1e-118 428.3 372 60.2
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 8.0e-118 427.9 377 57.6
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 2.3e-117 426.4 386 57.0
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 3.0e-117 426.0 373 60.3
Ciclev10020523m.g Citrus clementina HOM05D007853 ORTHO05D009873 5.7e-116 421.8 395 56.2
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 7.5e-116 421.4 378 58.5
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 6.3e-115 418.3 376 58.2
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.4e-114 417.2 384 57.6
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 1.4e-114 417.2 378 59.0
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.8e-114 416.8 376 58.0
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 9.1e-114 414.5 378 58.2
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 6.5e-112 408.3 374 56.7
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 5.5e-111 405.2 381 55.6
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 4.7e-110 402.1 375 55.7
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 1.4e-109 400.6 392 52.6
TAR636G2687 Trochodendron aralioides HOM05D007853 ORTHO05D009873 1.5e-108 397.1 380 53.4
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 2.0e-108 396.7 365 57.8
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 2.6e-108 396.4 377 54.4
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 1.4e-106 390.6 378 52.9
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 1.8e-106 390.2 370 54.3
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 4.1e-106 389.0 369 54.2
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 5.4e-106 388.7 368 54.1
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 5.4e-106 388.7 368 54.1
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 3.5e-105 386.0 374 54.3
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 1.7e-104 383.6 370 54.1
Lsat_1_v5_gn_5_179800 Lactuca sativa HOM05D007853 ORTHO05D009873 2.3e-104 383.3 395 51.4
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 2.9e-104 382.9 371 55.0
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 3.8e-104 382.5 370 53.8
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 6.6e-104 381.7 371 52.8
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.1e-103 380.9 382 53.1
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 1.9e-103 380.2 382 53.7
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 3.3e-103 379.4 386 51.6
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 4.3e-103 379.0 387 50.6
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 1.6e-102 377.1 373 53.4
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 4.7e-102 375.6 388 51.5
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 8.9e-101 371.3 398 49.5
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 4.9e-99 365.5 381 50.1
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 1.5e-95 354.0 388 47.7
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 7.3e-95 351.7 374 50.5
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.2e-94 350.9 358 51.7
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 1.6e-94 350.5 370 49.7
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 2.1e-94 350.1 374 50.8
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 1.4e-93 347.4 373 48.0
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.2e-91 340.1 363 51.0
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 2.9e-91 339.7 371 49.1
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 6.0e-89 332.0 328 54.3
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.0e-88 331.3 374 45.5
Haze_24777 Corylus avellana HOM05D007853 ORTHO05D009873 2.6e-76 290.0 217 63.1
Peaxi162Scf00517g00042 Petunia axillaris HOM05D007853 ORTHO05D009873 6.2e-70 268.9 242 54.1
Nn3g19919 Nelumbo nucifera HOM05D007853 ORTHO05D009873 2.0e-52 210.7 305 43.0
Nitab4.5_0006773g0030 Nicotiana tabacum HOM05D007853 ORTHO05D009873 4.5e-52 209.5 280 41.8
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 9.6e-47 191.8 382 32.5
Atru.chr5.2009 Acer truncatum HOM05D007853 ORTHO05D009873 7.6e-44 182.2 129 65.1
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 7.6e-36 155.6 383 29.0
Lalb_Chr00c01g0403781 Lupinus albus HOM05D007853 ORTHO05D009873 2.4e-29 134.0 208 39.9
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.1e-23 115.2 376 29.3
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.2e-22 110.9 399 30.6
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.2e-22 110.9 374 26.5
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 2.2e-22 110.9 367 27.0
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.8e-22 110.5 392 26.5
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.7e-22 110.2 340 28.2
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.4e-21 108.2 378 23.8
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.8e-21 107.8 377 26.5
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.4e-20 103.6 388 26.0
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 5.9e-20 102.8 372 26.3
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 2.9e-19 100.5 369 27.9
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.9e-19 100.5 397 23.7
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 2.9e-19 100.5 368 26.4
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 3.8e-19 100.1 340 26.8
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 5.0e-19 99.8 372 26.1
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 8.5e-19 99.0 322 26.1
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.1e-18 98.6 367 27.0
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 2.5e-18 97.4 347 27.1
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.5e-18 97.4 363 26.4
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 2.5e-18 97.4 383 25.1
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 4.2e-18 96.7 329 28.9
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 5.5e-18 96.3 338 25.4
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 5.5e-18 96.3 362 25.7
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 7.2e-18 95.9 380 27.6
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 9.4e-18 95.5 363 26.2
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.2e-17 95.1 369 25.5
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.6e-17 94.7 364 26.1
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.6e-17 94.7 346 25.4
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.6e-17 94.7 372 24.5
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 3.6e-17 93.6 340 26.2
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.7e-17 93.2 378 26.2
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.7e-17 93.2 366 24.9
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 7.9e-17 92.4 341 24.9
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.0e-16 92.0 361 24.1
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.8e-16 91.3 337 26.4
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.8e-16 91.3 366 25.4
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 3.0e-16 90.5 340 27.1
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.9e-16 90.1 364 23.6
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 6.7e-16 89.4 364 23.6
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 6.7e-16 89.4 368 26.1
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 6.7e-16 89.4 337 24.9
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 8.8e-16 89.0 339 26.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.1e-15 88.6 335 26.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.1e-15 88.6 368 23.4
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 1.5e-15 88.2 339 26.5
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 4.4e-15 86.7 395 25.1
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 7.4e-15 85.9 365 26.6
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.3e-14 85.1 340 25.6
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.7e-14 84.7 347 26.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 3.7e-14 83.6 372 24.5
Rhsim01G0257600 Rhododendron simsii HOM05D007853 ORTHO05D009873 8.2e-14 82.4 87 49.4
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.4e-13 81.6 343 23.3
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.4e-13 80.9 364 24.2
Mapoly0115s0063 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.1e-13 80.1 287 25.8
Pp3c10_6350 Physcomitrium patens HOM05D007853 ORTHO05D009873 9.1e-13 79.0 245 26.9
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 5.9e-12 76.3 60 55.0
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 5.9e-12 76.3 303 26.1
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 1.7e-11 74.7 381 24.7
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 2.9e-11 73.9 370 23.0
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 5.0e-11 73.2 273 24.2
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 6.5e-11 72.8 371 22.9
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 2.5e-10 70.9 324 23.1
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 7.2e-10 69.3 337 23.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.1e-09 67.8 182 25.8
Pp3c10_20160 Physcomitrium patens HOM05D003005 ORTHO05D004563 2.7e-09 67.4 323 23.8
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 2.7e-09 67.4 369 24.9
Mapoly1710s0002 Marchantia polymorpha HOM05D005561 ORTHO05D006834 8.0e-09 65.9 299 26.1
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.0e-08 65.5 298 26.2
SEGI_02380 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.0e-08 65.5 42 69.0
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 2.3e-08 64.3 317 23.7
AagrBONN_evm.TU.Sc2ySwM_117.2091 Anthoceros agrestis HOM05D003005 ORTHO05D004939 6.7e-08 62.8 368 21.2
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 8.8e-08 62.4 329 23.4
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 4.4e-07 60.1 328 23.8
Pp3c3_33090 Physcomitrium patens HOM05D030659 ORTHO05D009385 7.5e-07 59.3 383 23.2
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 9.7e-07 58.9 196 27.0
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 2.8e-06 57.4 329 21.9
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.8e-06 57.4 348 24.1
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 3.7e-06 57.0 260 25.8
A03p61850 Brassica napus HOM05D006415 ORTHO05D008549 8.2e-06 55.8 86 39.5


User provided reference genes

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