Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24710 Arabidopsis thaliana HOM05D001049 ORTHO05D026858 3.5e-29 131.0 67 100.0
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 1.4e-25 119.0 67 92.5
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 6.9e-25 116.7 67 89.6
CARHR076240 Cardamine hirsuta HOM05D001049 ORTHO05D005951 1.2e-24 115.9 67 89.6
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 1.2e-24 115.9 67 88.1
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 1.3e-23 112.5 67 85.1
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 1.7e-23 112.1 67 86.6
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 1.7e-23 112.1 67 86.6
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 1.7e-23 112.1 67 86.6
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 3.8e-23 110.9 67 85.1
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 8.4e-23 109.8 67 85.1
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 1.1e-22 109.4 67 83.6
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 3.2e-22 107.8 66 81.8
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 5.4e-22 107.1 68 83.8
BcaC05g28232 Brassica carinata HOM05D001049 ORTHO05D026858 2.3e-20 101.7 67 80.6
BolC5t33017H Brassica oleracea HOM05D001049 ORTHO05D026858 2.3e-20 101.7 67 80.6
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 4.8e-18 94.0 63 81.0
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 2.4e-17 91.7 66 75.8
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 1.2e-16 89.4 66 65.2
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 2.0e-16 88.6 66 62.1
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 2.0e-16 88.6 66 62.1
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 2.6e-16 88.2 65 70.8
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 4.5e-16 87.4 65 69.2
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 4.5e-16 87.4 66 62.1
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 4.5e-16 87.4 66 62.1
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 7.6e-16 86.7 66 65.2
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 7.6e-16 86.7 65 69.2
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 9.9e-16 86.3 65 70.8
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 9.9e-16 86.3 65 67.7
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 1.3e-15 85.9 66 62.1
Cpa.g.sc179.4 Carica papaya HOM05D001049 ORTHO05D005951 1.3e-15 85.9 66 65.2
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 1.7e-15 85.5 66 63.6
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.8e-15 84.3 66 65.2
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.8e-15 84.3 66 65.2
Actinidia15879 Actinidia chinensis HOM05D001049 ORTHO05D005951 4.9e-15 84.0 66 66.7
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 4.9e-15 84.0 66 63.6
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 4.9e-15 84.0 66 66.7
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 6.4e-15 83.6 66 63.6
Rhsim02G0050700 Rhododendron simsii HOM05D001049 ORTHO05D005951 6.4e-15 83.6 66 62.1
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 8.4e-15 83.2 66 62.1
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 1.9e-14 82.0 66 63.6
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 1.9e-14 82.0 66 63.6
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 2.4e-14 81.6 65 63.1
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 3.2e-14 81.3 66 60.6
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.2e-14 81.3 66 62.1
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 3.2e-14 81.3 66 57.6
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 3.2e-14 81.3 66 65.2
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 4.2e-14 80.9 66 63.6
QL02p051854 Quercus lobata HOM05D001049 ORTHO05D005951 4.2e-14 80.9 65 60.0
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 4.2e-14 80.9 66 62.1
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 5.5e-14 80.5 66 63.6
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 5.5e-14 80.5 65 63.1
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 5.5e-14 80.5 66 59.1
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 5.5e-14 80.5 66 63.6
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 7.1e-14 80.1 66 63.6
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 7.1e-14 80.1 66 65.2
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 7.1e-14 80.1 66 57.6
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 7.1e-14 80.1 65 63.1
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 7.1e-14 80.1 66 56.1
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 9.3e-14 79.7 66 59.1
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 9.3e-14 79.7 66 59.1
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 1.2e-13 79.3 66 62.1
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 1.2e-13 79.3 66 59.1
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 1.2e-13 79.3 66 59.1
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 1.2e-13 79.3 66 60.6
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 1.2e-13 79.3 66 60.6
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 1.6e-13 79.0 66 60.6
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 1.6e-13 79.0 66 62.1
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 1.6e-13 79.0 66 62.1
CiPaw.04G041100 Carya illinoinensis HOM05D001049 ORTHO05D005951 2.1e-13 78.6 66 65.2
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 2.1e-13 78.6 63 65.1
MBI19_g21647_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D005951 2.7e-13 78.2 66 57.6
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 2.7e-13 78.2 66 57.6
Potri.011G027100 Populus trichocarpa HOM05D001049 ORTHO05D026858 3.5e-13 77.8 66 60.6
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 4.6e-13 77.4 66 57.6
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 4.6e-13 77.4 66 59.1
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 6.0e-13 77.0 66 56.1
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 7.9e-13 76.6 66 59.1
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 7.9e-13 76.6 66 56.1
ClCG07G017080 Citrullus lanatus HOM05D001049 ORTHO05D005951 1.0e-12 76.3 66 57.6
Medtr7g101180 Medicago truncatula HOM05D001049 ORTHO05D005951 1.0e-12 76.3 66 59.1
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 1.8e-12 75.5 66 54.5
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 1.8e-12 75.5 66 54.5
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 1.8e-12 75.5 66 54.5
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 1.8e-12 75.5 66 53.0
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 3.0e-12 74.7 66 56.1
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 3.0e-12 74.7 66 57.6
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 3.9e-12 74.3 65 56.9
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 3.9e-12 74.3 66 56.1
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 6.7e-12 73.6 66 56.1
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 6.7e-12 73.6 66 50.0
CDE05G2069 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 8.7e-12 73.2 63 54.0
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 1.5e-11 72.4 66 59.1
CAN.G852.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.9e-11 72.0 66 57.6
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 1.9e-11 72.0 63 61.9
TAR371G1090 Trochodendron aralioides HOM05D001049 ORTHO05D005951 1.9e-11 72.0 66 62.1
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 2.5e-11 71.6 63 54.0
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 4.3e-11 70.9 66 51.5
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 7.4e-11 70.1 66 57.6
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 9.6e-11 69.7 65 50.8
Atru.chr13.1275 Acer truncatum HOM05D001049 ORTHO05D005951 1.6e-10 68.9 66 54.5
MD12G1122800 Malus domestica HOM05D001049 ORTHO05D005951 4.8e-10 67.4 67 53.7
SHI03732 Sapria himalayana HOM05D001049 ORTHO05D005951 4.8e-10 67.4 64 50.0
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 6.2e-10 67.0 67 49.3
Glyma.08G364302 Glycine max HOM05D001049 ORTHO05D005951 1.1e-09 66.2 63 50.8
MELO3C017636.2 Cucumis melo HOM05D001049 ORTHO05D005951 1.8e-09 65.5 56 60.7
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 3.1e-09 64.7 65 49.2
Mapoly0012s0011 Marchantia polymorpha HOM05D001049 ORTHO05D005951 5.3e-09 63.9 65 49.2
CBR_g76440 Chara braunii HOM05D001049 ORTHO05D005951 2.6e-08 61.6 65 43.1
ATR0564G081 Amborella trichopoda HOM05D001049 ORTHO05D005951 4.5e-08 60.8 55 50.9


User provided reference genes

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