Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24535 Arabidopsis thaliana HOM05D013429 ORTHO05D003021 5.2e-102 374.4 189 100.0
AL9U10630 Arabidopsis lyrata HOM05D013429 ORTHO05D003021 2.3e-86 322.4 188 88.8
Thhalv10026311m.g Eutrema salsugineum HOM05D013429 ORTHO05D003021 1.9e-67 259.6 186 74.7
Carub.0007s2939 Capsella rubella HOM05D013429 ORTHO05D003021 3.6e-63 245.4 187 71.1
Sp7g10760 Schrenkiella parvula HOM05D013429 ORTHO05D003021 1.4e-59 233.4 191 67.0
BcaC08g44311 Brassica carinata HOM05D013429 ORTHO05D003021 2.8e-55 219.2 191 64.9
C06p17340 Brassica napus HOM05D013429 ORTHO05D003021 2.8e-55 219.2 191 64.9
BolC6t36930H Brassica oleracea HOM05D013429 ORTHO05D003021 2.8e-55 219.2 191 64.9
CARHR218750 Cardamine hirsuta HOM05D013429 ORTHO05D003021 8.9e-54 214.2 191 64.4
A05p16510 Brassica napus HOM05D013429 ORTHO05D003021 5.4e-51 204.9 167 68.9
BraA05t20556Z Brassica rapa HOM05D013429 ORTHO05D003021 3.5e-50 202.2 167 68.3
BcaB03g12984 Brassica carinata HOM05D013429 ORTHO05D003021 2.8e-47 192.6 196 62.2
THA.LOC104804590 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 2.0e-29 133.3 199 47.2
THA.LOC109116490 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 9.3e-19 97.8 193 40.9
MD02G1046500 Malus domestica HOM05D002997 ORTHO05D003021 4.5e-13 79.0 213 35.2
Ah.14g082050 Amaranthus hybridus HOM05D002997 ORTHO05D003021 1.7e-12 77.0 216 31.0
Medtr6g086915 Medicago truncatula HOM05D002997 ORTHO05D003021 6.5e-12 75.1 174 35.1
TPR.G13701 Trifolium pratense HOM05D002997 ORTHO05D003021 6.5e-12 75.1 178 37.1
Prupe.7G231300 Prunus persica HOM05D002997 ORTHO05D003021 1.1e-11 74.3 221 32.1
EL10Ac8g18495 Beta vulgaris HOM05D002997 ORTHO05D003021 1.9e-11 73.6 208 31.7
CSS0045808 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 3.2e-11 72.8 176 31.8
RcHm_v2.0_Chr2g0090421 Rosa chinensis HOM05D002997 ORTHO05D003021 3.2e-11 72.8 204 33.8
Duzib187G1185 Durio zibethinus HOM05D002997 ORTHO05D003021 9.3e-11 71.2 206 35.0
Psat1g042720 Pisum sativum HOM05D002997 ORTHO05D003021 2.7e-10 69.7 175 35.4
TPR.G21686 Trifolium pratense HOM05D002997 ORTHO05D003021 2.7e-10 69.7 194 29.9
Dinv41605 Davidia involucrata HOM05D002997 ORTHO05D003021 4.6e-10 68.9 212 31.6
Ciclev10009432m.g Citrus clementina HOM05D002997 ORTHO05D003021 6.1e-10 68.6 216 30.6
TAR636G2256 Trochodendron aralioides HOM05D002997 ORTHO05D003021 1.3e-09 67.4 210 31.0
TAR624G0694 Trochodendron aralioides HOM05D002997 ORTHO05D003021 1.8e-09 67.0 196 32.7
Eucgr.C01041 Eucalyptus grandis HOM05D002997 ORTHO05D003021 2.3e-09 66.6 219 28.8
Sed0005249 Sechium edule HOM05D002997 ORTHO05D003021 2.3e-09 66.6 189 29.6
Sed0009770 Sechium edule HOM05D002997 ORTHO05D003021 2.3e-09 66.6 164 33.5
CiPaw.02G150100 Carya illinoinensis HOM05D002997 ORTHO05D003021 3.0e-09 66.2 210 32.4
Gohir.D07G005700 Gossypium hirsutum HOM05D002997 ORTHO05D003021 3.0e-09 66.2 188 33.0
Gorai.001G005300 Gossypium raimondii HOM05D002997 ORTHO05D003021 3.0e-09 66.2 188 33.0
Lj2g0000274 Lotus japonicus HOM05D002997 ORTHO05D003021 3.0e-09 66.2 208 28.4
Ca_17338_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 3.9e-09 65.9 193 31.6
Glyma.05G231000 Glycine max HOM05D002997 ORTHO05D003021 3.9e-09 65.9 226 30.5
TWI32G0809 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 3.9e-09 65.9 177 31.6
MELO3C025342.2 Cucumis melo HOM05D002997 ORTHO05D003021 5.1e-09 65.5 181 29.3
VMungo0251G2794 Vigna mungo HOM05D002997 ORTHO05D003021 5.1e-09 65.5 188 30.9
MD15G1184700 Malus domestica HOM05D002997 ORTHO05D003021 6.7e-09 65.1 212 31.1
CSS0002685 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 8.7e-09 64.7 175 30.3
Haze_25717 Corylus avellana HOM05D002997 ORTHO05D003021 8.7e-09 64.7 163 33.7
Manes.16G115900 Manihot esculenta HOM05D002997 ORTHO05D003021 8.7e-09 64.7 236 28.8
QL02p085284 Quercus lobata HOM05D002997 ORTHO05D003021 8.7e-09 64.7 219 30.6
Gohir.A07G006300 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.5e-08 63.9 189 31.2
Potri.018G080001 Populus trichocarpa HOM05D002997 ORTHO05D003021 2.5e-08 63.2 231 29.0
CSS0013816 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 3.3e-08 62.8 211 27.5
Sc18g0001230 Simmondsia chinensis HOM05D002997 ORTHO05D003021 3.3e-08 62.8 230 28.3
Gohir.A06G062800 Gossypium hirsutum HOM05D002997 ORTHO05D003021 4.3e-08 62.4 194 32.5
HanXRQChr09g0275181 Helianthus annuus HOM05D002997 ORTHO05D003021 4.3e-08 62.4 189 30.2
Lj4g0026369 Lotus japonicus HOM05D002997 ORTHO05D003021 4.3e-08 62.4 202 31.2
FAN26G0466 Fragaria x ananassa HOM05D002997 ORTHO05D003021 5.7e-08 62.0 204 33.3
Cfa003255 Carpinus fangiana HOM05D002997 ORTHO05D003021 7.4e-08 61.6 198 30.3
FAN19G1659 Fragaria x ananassa HOM05D002997 ORTHO05D003021 9.7e-08 61.2 202 30.2
CSS0015499 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 1.6e-07 60.5 181 30.4
FvH4_1g04790 Fragaria vesca HOM05D002997 ORTHO05D003021 1.6e-07 60.5 202 29.7
HanXRQChr12g0355621 Helianthus annuus HOM05D002997 ORTHO05D003021 1.6e-07 60.5 183 32.2
Lalb_Chr22g0352801 Lupinus albus HOM05D002997 ORTHO05D003021 1.6e-07 60.5 199 31.7
TWI63G1630 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 2.2e-07 60.1 178 32.0
CSS0016234 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 2.8e-07 59.7 181 30.4
MD09G1210900 Malus domestica HOM05D002997 ORTHO05D003021 2.8e-07 59.7 202 29.7
Thecc.09G110100 Theobroma cacao HOM05D002997 ORTHO05D003021 2.8e-07 59.7 216 32.4
Lsat_1_v5_gn_4_102060 Lactuca sativa HOM05D002997 ORTHO05D003021 3.7e-07 59.3 185 31.4
Lalb_Chr14g0371511 Lupinus albus HOM05D002997 ORTHO05D003021 4.8e-07 58.9 205 31.2
Sabra18G0067900 Salix brachista HOM05D002997 ORTHO05D003021 4.8e-07 58.9 229 27.9
FAN28G0775 Fragaria x ananassa HOM05D002997 ORTHO05D003021 6.3e-07 58.5 202 29.2
Cpa.g.sc23.107 Carica papaya HOM05D002997 ORTHO05D003021 8.2e-07 58.2 170 31.2
Medtr8g103530 Medicago truncatula HOM05D002997 ORTHO05D003021 8.2e-07 58.2 190 28.9
CANSAT25G2877 Cannabis sativa HOM05D002997 ORTHO05D003021 1.4e-06 57.4 205 28.3
Glyma.08G038500 Glycine max HOM05D002997 ORTHO05D003021 1.4e-06 57.4 229 29.3
Prupe.3G069200 Prunus persica HOM05D002997 ORTHO05D003021 1.4e-06 57.4 209 27.8
Medtr0147s0050 Medicago truncatula HOM05D002997 ORTHO05D003021 1.8e-06 57.0 202 28.7
Rhsim01G0094800 Rhododendron simsii HOM05D002997 ORTHO05D003021 1.8e-06 57.0 188 31.9
TWI12G0343 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 1.8e-06 57.0 200 31.0
Aqoxy7G01663 Aquilegia oxysepala HOM05D002997 ORTHO05D003021 2.4e-06 56.6 197 27.4
HanXRQChr10g0318581 Helianthus annuus HOM05D002997 ORTHO05D003021 4.1e-06 55.8 171 29.8
Phvul.002G313100 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 4.1e-06 55.8 199 31.7
VMungo0464G1542 Vigna mungo HOM05D002997 ORTHO05D003021 4.1e-06 55.8 235 26.8
CSS0043954 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 5.3e-06 55.5 208 28.4
Eucgr.J02977 Eucalyptus grandis HOM05D002997 ORTHO05D003021 5.3e-06 55.5 229 26.6
Lj5C59T17 Lonicera japonica HOM05D002997 ORTHO05D003021 5.3e-06 55.5 76 36.8
MD17G1193700 Malus domestica HOM05D002997 ORTHO05D003021 5.3e-06 55.5 200 28.5
Nitab4.5_0000351g0070 Nicotiana tabacum HOM05D001537 ORTHO05D008612 5.3e-06 55.5 202 25.7
COL.COLO4_34929 Corchorus olitorius HOM05D002997 ORTHO05D003021 6.9e-06 55.1 77 44.2
FAN02G2191 Fragaria x ananassa HOM05D002997 ORTHO05D003021 9.0e-06 54.7 202 28.2
Glyma.15G015400 Glycine max HOM05D002997 ORTHO05D003021 9.0e-06 54.7 205 29.8
Nitab4.5_0001948g0040 Nicotiana tabacum HOM05D002997 ORTHO05D003021 9.0e-06 54.7 224 27.7
Oeu028166.1 Olea europaea HOM05D002997 ORTHO05D003021 9.0e-06 54.7 197 26.9


User provided reference genes

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