Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G22580 Arabidopsis thaliana HOM05D000489 ORTHO05D000372 2.8e-67 258.5 128 100.0
Carub.0003s2272 Capsella rubella HOM05D000489 ORTHO05D000372 2.5e-23 112.5 122 58.2
BcaC09g49183 Brassica carinata HOM05D000489 ORTHO05D000372 9.7e-20 100.5 125 48.8
C01p41710 Brassica napus HOM05D000489 ORTHO05D000372 9.7e-20 100.5 125 48.8
BolC1t04125H Brassica oleracea HOM05D000489 ORTHO05D000372 9.7e-20 100.5 125 48.8
BcaB06g26372 Brassica carinata HOM05D000489 ORTHO05D000372 4.8e-19 98.2 113 52.2
Sp3g20370 Schrenkiella parvula HOM05D000489 ORTHO05D000372 4.8e-19 98.2 113 52.2
A01p32550 Brassica napus HOM05D000489 ORTHO05D000372 1.1e-18 97.1 113 51.3
BcaC09g49182 Brassica carinata HOM05D000489 ORTHO05D000372 1.8e-18 96.3 125 47.2
Carub.0003s2275 Capsella rubella HOM05D000489 ORTHO05D000372 1.8e-18 96.3 113 52.2
BcaC05g28032 Brassica carinata HOM05D000489 ORTHO05D000372 2.4e-18 95.9 113 51.3
C05p40470 Brassica napus HOM05D000489 ORTHO05D000372 2.4e-18 95.9 113 51.3
BolC5t32789H Brassica oleracea HOM05D000489 ORTHO05D000372 2.4e-18 95.9 113 51.3
AT3G22600 Arabidopsis thaliana HOM05D000489 ORTHO05D000372 3.1e-18 95.5 113 50.4
BolC1t04126H Brassica oleracea HOM05D000489 ORTHO05D000372 3.1e-18 95.5 114 50.9
BraA01t03385Z Brassica rapa HOM05D000489 ORTHO05D000372 3.1e-18 95.5 113 51.3
BcaB04g19207 Brassica carinata HOM05D000489 ORTHO05D000372 5.3e-18 94.7 104 51.0
A05p26070 Brassica napus HOM05D000489 ORTHO05D000372 9.1e-18 94.0 113 50.4
BcaB04g20510 Brassica carinata HOM05D000489 ORTHO05D000372 1.2e-17 93.6 104 51.0
AL3G36900 Arabidopsis lyrata HOM05D000489 ORTHO05D000372 1.6e-17 93.2 111 53.2
Thhalv10021660m.g Eutrema salsugineum HOM05D000489 ORTHO05D000372 1.6e-17 93.2 113 48.7
BcaC01g03435 Brassica carinata HOM05D000489 ORTHO05D000372 1.0e-16 90.5 113 48.7
C03p52620 Brassica napus HOM05D000489 ORTHO05D000372 2.9e-16 89.0 104 48.1
BolC3t17530H Brassica oleracea HOM05D000489 ORTHO05D000372 3.8e-16 88.6 113 47.8
BraA03t13430Z Brassica rapa HOM05D000489 ORTHO05D000372 6.5e-16 87.8 113 47.8
CARHR098450 Cardamine hirsuta HOM05D000489 ORTHO05D000372 6.5e-16 87.8 111 48.6
A03p42830 Brassica napus HOM05D000489 ORTHO05D000372 2.5e-15 85.9 104 47.1
Aa31LG8G9130 Aethionema arabicum HOM05D000489 ORTHO05D000372 9.4e-15 84.0 113 44.2
THA.LOC104808556 Tarenaya hassleriana HOM05D000489 ORTHO05D000372 3.4e-12 75.5 117 42.7
BolC8t48246H Brassica oleracea HOM05D000489 ORTHO05D000372 5.7e-12 74.7 118 42.4
CARHR259010 Cardamine hirsuta HOM05D000489 ORTHO05D000372 5.7e-12 74.7 117 46.2
FvH4_4g16110 Fragaria vesca HOM05D000489 ORTHO05D000372 5.7e-12 74.7 112 42.9
FAN12G1589 Fragaria x ananassa HOM05D000489 ORTHO05D000372 5.7e-12 74.7 112 42.9
FAN17G1366 Fragaria x ananassa HOM05D000489 ORTHO05D000372 5.7e-12 74.7 112 42.9
MD16G1196700 Malus domestica HOM05D000489 ORTHO05D000372 5.7e-12 74.7 112 43.8
Sp7g12950 Schrenkiella parvula HOM05D000489 ORTHO05D000372 5.7e-12 74.7 117 44.4
Aa31LG9G2560 Aethionema arabicum HOM05D000489 ORTHO05D000372 7.5e-12 74.3 107 41.1
AL7G41050 Arabidopsis lyrata HOM05D000489 ORTHO05D000372 9.8e-12 73.9 106 43.4
AT3G22570 Arabidopsis thaliana HOM05D000489 ORTHO05D000372 9.8e-12 73.9 105 45.7
Prupe.1G016900 Prunus persica HOM05D000489 ORTHO05D000372 2.2e-11 72.8 112 42.0
AT4G14815 Arabidopsis thaliana HOM05D000489 ORTHO05D000372 2.8e-11 72.4 106 43.4
FAN07G1345 Fragaria x ananassa HOM05D000489 ORTHO05D000372 2.8e-11 72.4 112 42.0
Sabra08G0118200 Salix brachista HOM05D000489 ORTHO05D000372 2.8e-11 72.4 130 39.2
MD13G1196200 Malus domestica HOM05D000489 ORTHO05D000372 3.7e-11 72.0 110 40.9
Lj6A605T81 Lonicera japonica HOM05D000489 ORTHO05D000372 6.3e-11 71.2 102 42.2
Lj6C602T8 Lonicera japonica HOM05D000489 ORTHO05D000372 6.3e-11 71.2 102 42.2
Lalb_Chr09g0320021 Lupinus albus HOM05D000489 ORTHO05D000372 1.1e-10 70.5 102 44.1
Aqoxy2G03422 Aquilegia oxysepala HOM05D000489 ORTHO05D000372 1.4e-10 70.1 104 38.5
Lj6C602T7 Lonicera japonica HOM05D000489 ORTHO05D000372 1.4e-10 70.1 111 40.5
Solyc03g005200.3 Solanum lycopersicum HOM05D000489 ORTHO05D000372 1.4e-10 70.1 104 37.5
Cpa.g.sc58.82 Carica papaya HOM05D000489 ORTHO05D000372 1.8e-10 69.7 105 41.0
DCAR_030662 Daucus carota HOM05D000489 ORTHO05D000372 1.8e-10 69.7 102 37.3
FAN22G0316 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.8e-10 69.7 95 44.2
Lalb_Chr16g0376501 Lupinus albus HOM05D000489 ORTHO05D000372 1.8e-10 69.7 113 42.5
Sed0011893 Sechium edule HOM05D000489 ORTHO05D000372 1.8e-10 69.7 108 38.9
CANSAT78G0500 Cannabis sativa HOM05D000489 ORTHO05D000372 2.4e-10 69.3 105 41.0
Hma1.2p1_1572F.1_g291400 Hydrangea macrophylla HOM05D000489 ORTHO05D000372 2.4e-10 69.3 102 42.2
Hma1.2p1_2201F.1_g317034 Hydrangea macrophylla HOM05D000489 ORTHO05D000372 2.4e-10 69.3 102 42.2
Lj6C605T5 Lonicera japonica HOM05D000489 ORTHO05D000372 3.1e-10 68.9 111 40.5
CsaV3_3G013120 Cucumis sativus L. HOM05D000489 ORTHO05D000372 4.1e-10 68.6 87 42.5
Hma1.2p1_1572F.1_g291390 Hydrangea macrophylla HOM05D000489 ORTHO05D000372 4.1e-10 68.6 102 41.2
Hma1.2p1_2201F.1_g317032 Hydrangea macrophylla HOM05D000489 ORTHO05D000372 4.1e-10 68.6 102 41.2
Potri.008G155100 Populus trichocarpa HOM05D000489 ORTHO05D000372 4.1e-10 68.6 111 42.3
Potri.010G085400 Populus trichocarpa HOM05D000489 ORTHO05D000372 4.1e-10 68.6 102 42.2
Gohir.A09G217000 Gossypium hirsutum HOM05D000489 ORTHO05D000372 7.0e-10 67.8 113 39.8
Gohir.A09G217100 Gossypium hirsutum HOM05D000489 ORTHO05D000372 7.0e-10 67.8 113 39.8
Gohir.D08G204700 Gossypium hirsutum HOM05D000489 ORTHO05D000372 7.0e-10 67.8 104 39.4
Gorai.004G216700 Gossypium raimondii HOM05D000489 ORTHO05D000372 7.0e-10 67.8 104 39.4
Ca_24423_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 1.2e-09 67.0 115 39.1
Peaxi162Scf00402g00511 Petunia axillaris HOM05D000489 ORTHO05D000372 1.2e-09 67.0 111 38.7
Thhalv10026452m.g Eutrema salsugineum HOM05D000489 ORTHO05D000372 1.6e-09 66.6 106 39.6
Gorai.006G240400 Gossypium raimondii HOM05D000489 ORTHO05D000372 1.6e-09 66.6 113 38.9
HanXRQChr14g0435961 Helianthus annuus HOM05D000489 ORTHO05D000372 1.6e-09 66.6 106 36.8
Phvul.002G042350 Phaseolus vulgaris HOM05D000489 ORTHO05D000372 1.6e-09 66.6 89 44.9
Sopen03g001220 Solanum pennellii HOM05D000489 ORTHO05D000372 1.6e-09 66.6 104 36.5
Gohir.D09G219500 Gossypium hirsutum HOM05D000489 ORTHO05D000372 2.0e-09 66.2 113 39.8
Gorai.006G240500 Gossypium raimondii HOM05D000489 ORTHO05D000372 2.0e-09 66.2 113 39.8
PGSC0003DMG400013434 Solanum tuberosum HOM05D000489 ORTHO05D000372 2.0e-09 66.2 106 37.7
CSS0026482 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 2.7e-09 65.9 104 38.5
CiPaw.01G168500 Carya illinoinensis HOM05D000489 ORTHO05D000372 2.7e-09 65.9 112 41.1
CiPaw.02G099000 Carya illinoinensis HOM05D000489 ORTHO05D000372 2.7e-09 65.9 112 41.1
Glyma.11G008000 Glycine max HOM05D000489 ORTHO05D000372 2.7e-09 65.9 104 39.4
Oeu058968.1 Olea europaea HOM05D000489 ORTHO05D000372 2.7e-09 65.9 106 34.9
Sabra10G0058100 Salix brachista HOM05D000489 ORTHO05D000372 2.7e-09 65.9 115 40.0
Haze_00869 Corylus avellana HOM05D000489 ORTHO05D000372 3.5e-09 65.5 112 40.2
ClCG05G005060 Citrullus lanatus HOM05D000489 ORTHO05D000372 4.5e-09 65.1 113 38.9
Glyma.01G234900 Glycine max HOM05D000489 ORTHO05D000372 4.5e-09 65.1 113 40.7
Gohir.D09G219400 Gossypium hirsutum HOM05D000489 ORTHO05D000372 4.5e-09 65.1 113 38.1
HanXRQChr10g0310011 Helianthus annuus HOM05D000489 ORTHO05D000372 4.5e-09 65.1 104 36.5
Oeu042806.1 Olea europaea HOM05D000489 ORTHO05D000372 4.5e-09 65.1 104 35.6
RcHm_v2.0_Chr6g0290491 Rosa chinensis HOM05D000489 ORTHO05D000372 4.5e-09 65.1 118 35.6
Lj5g0010248 Lotus japonicus HOM05D000489 ORTHO05D000372 5.9e-09 64.7 112 39.3
CSS0002793 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 7.7e-09 64.3 103 34.0
HanXRQChr01g0022311 Helianthus annuus HOM05D000489 ORTHO05D000372 7.7e-09 64.3 101 36.6
Hma1.2p1_0822F.1_g224270 Hydrangea macrophylla HOM05D000489 ORTHO05D000372 7.7e-09 64.3 104 38.5
Manes.15G030500 Manihot esculenta HOM05D000489 ORTHO05D000372 7.7e-09 64.3 112 38.4
Nitab4.5_0005172g0020 Nicotiana tabacum HOM05D000489 ORTHO05D000372 7.7e-09 64.3 99 38.4
THA.LOC104803040 Tarenaya hassleriana HOM05D000489 ORTHO05D000372 7.7e-09 64.3 114 39.5
Cc03_g04020 Coffea canephora HOM05D000489 ORTHO05D000372 1.0e-08 63.9 102 38.2
ECA248G2909 Erigeron canadensis HOM05D000489 ORTHO05D000372 1.0e-08 63.9 104 40.4
Gorai.005G044100 Gossypium raimondii HOM05D000489 ORTHO05D000372 1.0e-08 63.9 107 39.3
Nitab4.5_0008064g0030 Nicotiana tabacum HOM05D000489 ORTHO05D000372 1.0e-08 63.9 112 37.5
TWI53G0660 Tripterygium wilfordii HOM05D000489 ORTHO05D000372 1.0e-08 63.9 103 38.8
Actinidia36950 Actinidia chinensis HOM05D000489 ORTHO05D000372 1.3e-08 63.5 105 36.2
Lj5g0016314 Lotus japonicus HOM05D000489 ORTHO05D000372 1.3e-08 63.5 107 39.3
Ciclev10006599m.g Citrus clementina HOM05D000489 ORTHO05D000372 1.7e-08 63.2 106 37.7
Dinv44553 Davidia involucrata HOM05D000489 ORTHO05D000372 1.7e-08 63.2 103 37.9
Eucgr.H03442 Eucalyptus grandis HOM05D000489 ORTHO05D000372 1.7e-08 63.2 87 41.4
FAN15G3173 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.7e-08 63.2 110 38.2
FAN20G1637 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.7e-08 63.2 110 38.2
FAN27G2841 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.7e-08 63.2 110 38.2
Gohir.A02G033300 Gossypium hirsutum HOM05D000489 ORTHO05D000372 1.7e-08 63.2 107 39.3
HanXRQChr10g0310021 Helianthus annuus HOM05D000489 ORTHO05D000372 1.7e-08 63.2 100 37.0
Lsat_1_v5_gn_2_44840 Lactuca sativa HOM05D000489 ORTHO05D000372 1.7e-08 63.2 105 37.1
Duzib212G0281 Durio zibethinus HOM05D000489 ORTHO05D000372 2.2e-08 62.8 102 40.2
Gohir.D02G039800 Gossypium hirsutum HOM05D000489 ORTHO05D000372 2.2e-08 62.8 107 38.3
Manes.03G176600 Manihot esculenta HOM05D000489 ORTHO05D000372 2.2e-08 62.8 100 39.0
GSVIVG01001177001 Vitis vinifera HOM05D000489 ORTHO05D000372 2.2e-08 62.8 103 37.9
Psat6g059760 Pisum sativum HOM05D000489 ORTHO05D000372 2.9e-08 62.4 113 35.4
Thecc.04G234700 Theobroma cacao HOM05D000489 ORTHO05D000372 2.9e-08 62.4 112 39.3
MSTRG.21864 Avicennia marina HOM05D000489 ORTHO05D000372 3.8e-08 62.0 101 37.6
ECA238G3624 Erigeron canadensis HOM05D000489 ORTHO05D000372 3.8e-08 62.0 104 36.5
Eucgr.B01056 Eucalyptus grandis HOM05D000489 ORTHO05D000372 3.8e-08 62.0 103 34.0
FvH4_2g23220 Fragaria vesca HOM05D000489 ORTHO05D000372 3.8e-08 62.0 110 38.2
FAN24G1682 Fragaria x ananassa HOM05D000489 ORTHO05D000372 3.8e-08 62.0 110 38.2
Gorai.005G222300 Gossypium raimondii HOM05D000489 ORTHO05D000372 3.8e-08 62.0 113 36.3
HanXRQChr10g0310031 Helianthus annuus HOM05D000489 ORTHO05D000372 3.8e-08 62.0 95 36.8
Sc17g0001290 Simmondsia chinensis HOM05D000489 ORTHO05D000372 3.8e-08 62.0 103 40.8
Duzib052G0439 Durio zibethinus HOM05D000489 ORTHO05D000372 5.0e-08 61.6 110 37.3
Duzib151G0620 Durio zibethinus HOM05D000489 ORTHO05D000372 5.0e-08 61.6 112 39.3
EL10Ac5g10539 Beta vulgaris HOM05D000489 ORTHO05D000372 6.5e-08 61.2 110 37.3
COL.COLO4_21512 Corchorus olitorius HOM05D000489 ORTHO05D000372 6.5e-08 61.2 102 37.3
Glyma.10G028100 Glycine max HOM05D000489 ORTHO05D000372 6.5e-08 61.2 107 38.3
Oeu052359.2 Olea europaea HOM05D000489 ORTHO05D000372 6.5e-08 61.2 115 36.5
Prupe.8G237900 Prunus persica HOM05D000489 ORTHO05D000372 6.5e-08 61.2 96 41.7
RcHm_v2.0_Chr6g0290511 Rosa chinensis HOM05D000489 ORTHO05D000372 6.5e-08 61.2 101 39.6
arahy.Tifrunner.gnm1.ann1.B3FCUF Arachis hypogaea HOM05D000489 ORTHO05D000372 8.5e-08 60.8 89 41.6
arahy.Tifrunner.gnm1.ann1.TCR2SD Arachis hypogaea HOM05D000489 ORTHO05D000372 8.5e-08 60.8 89 41.6
Lsat_1_v5_gn_1_73221 Lactuca sativa HOM05D000489 ORTHO05D000372 1.1e-07 60.5 102 35.3
GSVIVG01018008001 Vitis vinifera HOM05D000489 ORTHO05D000372 1.1e-07 60.5 89 39.3
Atru.chr4.2436 Acer truncatum HOM05D000489 ORTHO05D000372 1.5e-07 60.1 111 36.0
Atru.ctg752_3.51 Acer truncatum HOM05D000489 ORTHO05D000372 1.5e-07 60.1 111 36.0
Lj5g0025398 Lotus japonicus HOM05D000489 ORTHO05D000372 1.5e-07 60.1 112 38.4
Oeu018975.2 Olea europaea HOM05D000489 ORTHO05D000372 1.5e-07 60.1 86 40.7
Peaxi162Scf00092g00324 Petunia axillaris HOM05D000489 ORTHO05D000372 1.9e-07 59.7 108 35.2
Glyma.20G146800 Glycine max HOM05D000489 ORTHO05D000372 2.5e-07 59.3 113 35.4
Actinidia08483 Actinidia chinensis HOM05D000489 ORTHO05D000372 3.2e-07 58.9 108 36.1
Actinidia23526 Actinidia chinensis HOM05D000489 ORTHO05D000372 3.2e-07 58.9 103 35.0
Dinv14010 Davidia involucrata HOM05D000489 ORTHO05D000372 3.2e-07 58.9 112 37.5
Lsat_1_v5_gn_2_44900 Lactuca sativa HOM05D000489 ORTHO05D000372 3.2e-07 58.9 106 33.0
Nitab4.5_0006783g0040 Nicotiana tabacum HOM05D000489 ORTHO05D000372 3.2e-07 58.9 101 34.7
Sc13g0004530 Simmondsia chinensis HOM05D000489 ORTHO05D000372 3.2e-07 58.9 109 35.8
Sc13g0006080 Simmondsia chinensis HOM05D000489 ORTHO05D000372 3.2e-07 58.9 109 35.8
TAR365G0864 Trochodendron aralioides HOM05D000489 ORTHO05D000372 3.2e-07 58.9 113 37.2
Medtr1g071730 Medicago truncatula HOM05D000489 ORTHO05D000372 4.2e-07 58.5 111 36.0
Medtr1g103490 Medicago truncatula HOM05D000489 ORTHO05D000372 4.2e-07 58.5 108 36.1
PSO210G7788 Papaver somniferum HOM05D000489 ORTHO05D000372 5.5e-07 58.2 112 36.6
Peaxi162Scf00131g00121 Petunia axillaris HOM05D000489 ORTHO05D000372 1.2e-06 57.0 136 31.6
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 1.2e-06 57.0 84 39.3
TWI73G0521 Tripterygium wilfordii HOM05D000489 ORTHO05D000372 1.2e-06 57.0 77 40.3
AUR62028597 Chenopodium quinoa HOM05D003852 ORTHO05D003095 2.1e-06 56.2 115 34.8
Lalb_Chr01g0017021 Lupinus albus HOM05D000489 ORTHO05D000372 2.1e-06 56.2 112 30.4


User provided reference genes

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