Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.4e-145 519.6 271 100.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 5.8e-131 471.1 281 89.7
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.1e-128 462.6 281 89.3
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.3e-126 455.3 280 87.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.8e-124 449.5 281 85.4
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 5.3e-124 448.0 280 86.8
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 6.7e-119 431.0 270 85.2
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 8.7e-119 430.6 287 81.9
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 8.7e-119 430.6 280 83.6
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-118 429.9 277 83.4
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.6e-117 426.4 270 84.1
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 8.1e-117 424.1 254 87.0
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 8.1e-117 424.1 254 87.0
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.8e-116 422.9 270 84.1
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.4e-116 422.5 280 82.5
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.3e-116 421.4 270 82.6
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 7.6e-115 417.5 267 83.1
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 2.2e-114 416.0 284 79.2
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 4.9e-114 414.8 270 83.0
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 6.4e-114 414.5 280 80.4
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 8.4e-114 414.1 267 82.8
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 7.1e-113 411.0 280 78.6
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 3.0e-111 405.6 260 84.2
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 5.1e-111 404.8 272 80.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.3e-110 401.7 267 79.8
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 6.7e-103 377.9 272 75.4
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.3e-102 375.6 284 72.9
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.7e-102 374.8 279 73.5
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 9.7e-102 374.0 284 71.8
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-101 373.2 223 85.7
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.6e-101 373.2 279 70.6
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.2e-101 372.9 198 91.9
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.7e-101 372.1 245 79.6
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.7e-101 372.1 198 91.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.8e-101 371.7 284 73.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 4.8e-101 371.7 282 71.3
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 6.3e-101 371.3 284 70.4
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 8.2e-101 370.9 288 72.9
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.4e-100 370.2 283 71.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.4e-100 370.2 209 88.0
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.8e-100 369.8 231 80.5
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.8e-100 369.8 288 72.6
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.8e-100 369.8 245 80.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 3.1e-100 369.0 209 87.6
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 4.1e-100 368.6 198 89.9
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 9.0e-100 367.5 262 73.3
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 9.0e-100 367.5 277 70.0
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.2e-99 367.1 198 91.4
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.2e-99 367.1 282 70.2
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.2e-99 367.1 277 71.1
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.5e-99 366.7 212 86.3
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.5e-99 366.7 243 78.6
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.5e-99 366.7 212 86.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.5e-99 366.7 243 76.5
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.5e-99 366.7 277 69.7
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.0e-99 366.3 198 89.9
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.6e-99 365.9 198 90.9
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 2.6e-99 365.9 279 69.9
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.4e-99 365.5 222 82.9
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 3.4e-99 365.5 222 82.0
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 5.9e-99 364.8 268 72.8
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 7.6e-99 364.4 280 71.8
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 7.6e-99 364.4 287 70.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.7e-98 363.2 232 80.6
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.9e-98 362.5 223 83.4
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.8e-98 362.1 222 81.1
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 5.0e-98 361.7 281 69.4
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 5.0e-98 361.7 279 69.2
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.5e-98 360.9 285 69.8
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 8.5e-98 360.9 243 78.2
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 8.5e-98 360.9 278 69.4
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 1.1e-97 360.5 218 83.9
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.4e-97 360.1 207 85.5
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.9e-97 359.8 276 70.7
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.9e-97 359.8 281 70.1
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.5e-97 359.4 224 81.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 5.5e-97 358.2 280 69.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 9.3e-97 357.5 243 76.1
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.2e-96 357.1 221 81.4
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.7e-96 355.9 271 73.1
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 2.7e-96 355.9 227 76.7
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.7e-96 355.9 199 86.9
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.7e-96 355.9 282 68.8
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 4.6e-96 355.1 199 86.4
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 7.9e-96 354.4 219 80.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.0e-95 354.0 207 84.5
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 3.9e-95 352.1 206 83.5
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.7e-95 351.3 276 65.9
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 8.8e-95 350.9 244 73.4
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.1e-94 350.5 275 68.7
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.5e-94 350.1 283 69.3
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.5e-94 350.1 253 71.1
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.9e-94 349.7 202 83.2
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.5e-94 349.4 198 85.4
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.3e-94 348.6 272 69.5
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.3e-94 348.6 269 69.5
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 4.3e-94 348.6 265 70.2
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.7e-94 348.2 188 88.8
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.3e-93 347.1 235 74.5
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-93 347.1 272 69.1
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.2e-93 346.3 270 69.3
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 2.8e-93 345.9 220 77.7
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.7e-93 345.5 208 84.1
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.1e-92 342.4 230 73.9
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 4.1e-92 342.0 271 67.5
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.9e-92 341.3 226 75.7
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 6.9e-92 341.3 295 65.4
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.2e-91 340.5 281 67.3
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 7.7e-91 337.8 198 82.8
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 2.2e-90 336.3 275 67.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.2e-90 336.3 203 83.7
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.1e-89 334.0 244 70.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.5e-86 323.6 198 79.8
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.0e-86 323.2 273 66.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.7e-85 320.1 271 66.4
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 4.8e-85 318.5 212 77.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-84 316.6 307 57.7
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.1e-84 315.8 277 67.9
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.1e-84 315.5 206 77.2
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.0e-82 310.8 166 90.4
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.0e-82 310.8 205 77.1
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 2.2e-82 309.7 289 64.0
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 8.0e-80 301.2 236 65.7
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 2.3e-79 299.7 273 63.4
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 3.9e-79 298.9 166 88.6
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.2e-77 293.1 206 71.8
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 7.7e-75 284.6 164 84.1
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.3e-74 283.9 154 87.0
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 8.5e-74 281.2 198 69.7
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.6e-72 276.9 159 88.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.7e-72 276.2 219 65.8
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 8.0e-72 274.6 204 66.2
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 2.3e-71 273.1 218 68.8
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-70 270.8 238 62.6
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 5.7e-70 268.5 229 65.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.7e-70 268.5 151 85.4
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-69 267.3 162 81.5
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.1e-68 262.3 158 79.7
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 9.1e-68 261.2 209 65.6
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.6e-67 260.4 148 82.4
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.0e-67 260.0 149 86.6
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.5e-65 253.8 212 64.6
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.1e-64 250.0 216 63.0
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.4e-62 242.7 234 59.4
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.8e-58 229.2 167 72.5
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 5.0e-58 228.8 236 57.2
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 1.1e-57 227.6 138 76.1
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.1e-56 223.4 224 47.3
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 5.6e-49 198.7 174 63.2
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 5.6e-49 198.7 153 69.9
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.3e-45 187.6 331 40.8
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.4e-45 185.3 106 81.1
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 6.8e-39 165.2 189 51.3
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 5.8e-38 162.2 188 43.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 2.1e-35 153.7 200 39.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 9.5e-33 144.8 222 38.7
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.9e-30 134.8 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 3.4e-22 109.8 62 82.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-21 107.5 62 80.6
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.7e-18 97.4 55 87.3
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 5.1e-18 95.9 59 78.0
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.3e-12 75.1 40 87.5
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 7.8e-11 72.0 118 39.0
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-10 70.9 36 86.1
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.9e-10 69.7 43 74.4
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.9e-10 69.7 36 83.3
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.7e-10 68.6 49 71.4
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 2.5e-09 67.0 37 83.8
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 6.2e-08 62.4 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.1e-07 60.1 42 64.3
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.5e-06 57.8 34 73.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 4.5e-06 56.2 31 80.6


User provided reference genes

Program Settings