Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 2.2e-129 465.7 242 100.0
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 1.9e-117 426.0 237 92.8
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 6.6e-102 374.4 245 79.6
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 3.3e-101 372.1 240 82.5
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 6.8e-91 337.8 253 71.9
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 2.8e-84 315.8 253 70.4
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 1.2e-82 310.5 237 72.6
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 5.4e-80 301.6 234 71.8
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 5.4e-80 301.6 234 71.8
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 3.5e-79 298.9 237 70.9
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 7.9e-79 297.7 245 69.4
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 7.9e-79 297.7 245 69.4
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 5.1e-78 295.0 257 66.5
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 1.8e-70 270.0 238 65.1
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 3.9e-70 268.9 253 62.5
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 3.9e-70 268.9 253 62.5
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 3.9e-70 268.9 253 62.5
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 6.7e-70 268.1 238 65.1
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 1.6e-34 150.6 105 70.5
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 3.8e-33 146.0 99 72.7
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 6.5e-33 145.2 104 67.3
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 6.5e-33 145.2 102 68.6
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 1.2e-31 141.0 113 63.7
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 1.6e-31 140.6 109 67.0
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 2.7e-31 139.8 109 66.1
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 5.2e-30 135.6 109 62.4
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 1.1e-27 127.9 110 60.0
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 2.4e-27 126.7 110 60.9
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 4.1e-27 125.9 110 60.9
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 9.1e-27 124.8 120 56.7
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 1.6e-26 124.0 110 60.0
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 1.6e-26 124.0 110 60.0
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 1.6e-26 124.0 104 59.6
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 4.5e-26 122.5 97 61.9
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 7.7e-26 121.7 96 63.5
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 2.9e-25 119.8 110 52.7
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 5.0e-25 119.0 94 62.8
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 5.0e-25 119.0 94 62.8
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 6.5e-25 118.6 101 57.4
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.9e-24 117.1 98 61.2
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 2.5e-24 116.7 98 60.2
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 4.2e-24 115.9 101 55.4
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 5.5e-24 115.5 136 48.5
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 8.0e-23 111.7 90 61.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 8.0e-23 111.7 136 50.0
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 1.4e-22 110.9 90 62.2
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 1.4e-22 110.9 90 62.2
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 4.0e-22 109.4 98 57.1
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 5.2e-22 109.0 116 47.4
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 1.2e-21 107.8 70 74.3
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 3.4e-21 106.3 83 61.4
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 5.7e-21 105.5 77 63.6
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.3e-20 104.4 89 59.6
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 1.3e-20 104.4 95 56.8
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 3.7e-20 102.8 90 60.0
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.1e-19 101.3 98 54.1
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 3.1e-19 99.8 79 63.3
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 3.1e-19 99.8 79 63.3
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.1e-19 99.8 106 52.8
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 1.6e-18 97.4 115 43.5
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 1.6e-18 97.4 116 49.1
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 4.5e-18 95.9 93 54.8
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 4.5e-18 95.9 76 59.2
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.9e-16 90.5 77 59.7
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 9.4e-16 88.2 71 57.7
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 1.4e-14 84.3 166 33.7
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 4.4e-13 79.3 171 33.9
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 2.8e-12 76.6 75 53.3
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 7.0e-11 72.0 67 53.7
Aa31LG9G2370 Aethionema arabicum HOM05D000032 ORTHO05D004222 2.7e-10 70.1 140 37.1
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 8.6e-09 65.1 76 39.5
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 8.6e-09 65.1 76 39.5
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 1.6e-07 60.8 54 55.6
Sp3g20100 Schrenkiella parvula HOM05D000032 ORTHO05D004222 3.6e-07 59.7 95 44.2
THA.LOC104822276 Tarenaya hassleriana HOM05D000032 ORTHO05D004222 4.7e-07 59.3 142 33.1
BcaC05g28082 Brassica carinata HOM05D000032 ORTHO05D004222 8.0e-07 58.5 134 36.6
C05p41050 Brassica napus HOM05D000032 ORTHO05D004222 8.0e-07 58.5 134 36.6
BolC5t32847H Brassica oleracea HOM05D000032 ORTHO05D004222 8.0e-07 58.5 134 36.6
A05p26460 Brassica napus HOM05D000032 ORTHO05D004222 2.3e-06 57.0 135 34.8
BraA05t21519Z Brassica rapa HOM05D000032 ORTHO05D004222 2.3e-06 57.0 135 34.8
CARHR098210 Cardamine hirsuta HOM05D000032 ORTHO05D004222 5.2e-06 55.8 97 42.3
THA.LOC104808533 Tarenaya hassleriana HOM05D000032 ORTHO05D004222 5.2e-06 55.8 130 33.8


User provided reference genes

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