Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G22100 Arabidopsis thaliana HOM05D007657 ORTHO05D009471 1.5e-136 489.6 253 100.0
AL3G36280 Arabidopsis lyrata HOM05D007657 ORTHO05D009471 1.4e-94 350.1 272 75.7
Carub.0003s2227 Capsella rubella HOM05D007657 ORTHO05D009471 5.3e-78 295.0 296 63.9
Sp3g19920 Schrenkiella parvula HOM05D007657 ORTHO05D009471 5.9e-61 238.4 283 54.1
A05p26740 Brassica napus HOM05D007657 ORTHO05D009471 3.7e-55 219.2 268 53.0
BraA05t21556Z Brassica rapa HOM05D007657 ORTHO05D009471 1.1e-54 217.6 268 52.6
Thhalv10021235m.g Eutrema salsugineum HOM05D007657 ORTHO05D009471 2.5e-51 206.5 288 50.7
BcaC05g28104 Brassica carinata HOM05D007657 ORTHO05D009471 2.8e-50 203.0 285 48.8
C05p41310 Brassica napus HOM05D007657 ORTHO05D009471 2.8e-50 203.0 285 48.8
BolC5t32872H Brassica oleracea HOM05D007657 ORTHO05D009471 2.8e-50 203.0 285 48.8
BcaB04g20544 Brassica carinata HOM05D007657 ORTHO05D009471 1.0e-49 201.1 279 53.0
Aa31LG8G8650 Aethionema arabicum HOM05D007657 ORTHO05D009471 1.4e-49 200.7 254 50.4
BcaB06g26306 Brassica carinata HOM05D007657 ORTHO05D009471 9.8e-48 194.5 277 49.8
THA.LOC104802534 Tarenaya hassleriana HOM05D007657 ORTHO05D009471 3.2e-38 162.9 269 43.9
CiPaw.03G164200 Carya illinoinensis HOM05D007657 ORTHO05D009471 5.8e-24 115.5 206 40.8
MBI18_g21102_MAGBIO Magnolia biondii HOM05D007657 ORTHO05D009471 4.1e-22 109.4 116 51.7
MBI18_g45174_MAGBIO Magnolia biondii HOM05D007657 ORTHO05D009471 4.1e-22 109.4 116 51.7
Hma1.2p1_2477F.1_g322870 Hydrangea macrophylla HOM05D007657 ORTHO05D009471 9.2e-22 108.2 182 37.9
Cpa.g.sc8.253 Carica papaya HOM05D007657 ORTHO05D009471 2.1e-21 107.1 264 34.5
TWI18G0648 Tripterygium wilfordii HOM05D007657 ORTHO05D009471 2.1e-21 107.1 189 38.1
Thecc.02G164200 Theobroma cacao HOM05D007657 ORTHO05D009471 2.7e-21 106.7 263 35.7
COL.COLO4_13025 Corchorus olitorius HOM05D007657 ORTHO05D009471 1.7e-20 104.0 110 49.1
Rhsim04G0057500 Rhododendron simsii HOM05D007657 ORTHO05D009471 1.7e-20 104.0 116 43.1
Cfa014460 Carpinus fangiana HOM05D007657 ORTHO05D009471 2.3e-20 103.6 184 40.8
Dinv18547 Davidia involucrata HOM05D007657 ORTHO05D009471 8.6e-20 101.7 111 47.7
Duzib052G0340 Durio zibethinus HOM05D007657 ORTHO05D009471 1.1e-19 101.3 256 33.6
Ca_01565_v3 Cicer arietinum L. HOM05D007657 ORTHO05D009471 1.5e-19 100.9 257 32.3
Duzib248G0741 Durio zibethinus HOM05D007657 ORTHO05D009471 1.5e-19 100.9 235 35.3
Phvul.005G112100 Phaseolus vulgaris HOM05D007657 ORTHO05D009471 1.5e-19 100.9 176 38.6
ClCG02G001620 Citrullus lanatus HOM05D007657 ORTHO05D009471 1.9e-19 100.5 204 33.8
CsaV3_7G003870 Cucumis sativus L. HOM05D007657 ORTHO05D009471 3.3e-19 99.8 188 37.2
arahy.Tifrunner.gnm1.ann1.X70W6B Arachis hypogaea HOM05D007657 ORTHO05D009471 4.3e-19 99.4 166 39.8
RcHm_v2.0_Chr2g0160481 Rosa chinensis HOM05D007657 ORTHO05D009471 4.3e-19 99.4 178 37.6
MELO3C018792.2 Cucumis melo HOM05D007657 ORTHO05D009471 5.6e-19 99.0 189 37.0
Gohir.A03G163000 Gossypium hirsutum HOM05D007657 ORTHO05D009471 1.2e-18 97.8 199 37.7
Lsat_1_v5_gn_3_43060 Lactuca sativa HOM05D007657 ORTHO05D009471 1.2e-18 97.8 179 34.6
Lj3g0008282 Lotus japonicus HOM05D007657 ORTHO05D009471 2.1e-18 97.1 105 44.8
Nn1g03743 Nelumbo nucifera HOM05D020747 ORTHO05D009471 2.1e-18 97.1 221 34.8
Atru.chr6.3119 Acer truncatum HOM05D007657 ORTHO05D009471 2.8e-18 96.7 139 39.6
CDE05G1372 Ceratophyllum demersum HOM05D007657 ORTHO05D009471 2.8e-18 96.7 105 47.6
VMungo1080G1905 Vigna mungo HOM05D007657 ORTHO05D009471 2.8e-18 96.7 172 36.6
TPR.G30798 Trifolium pratense HOM05D007657 ORTHO05D009471 3.6e-18 96.3 114 47.4
MD17G1091100 Malus domestica HOM05D007657 ORTHO05D009471 4.7e-18 95.9 117 43.6
Sed0004603 Sechium edule HOM05D007657 ORTHO05D009471 6.2e-18 95.5 178 38.8
FvH4_6g43750 Fragaria vesca HOM05D007657 ORTHO05D009471 8.1e-18 95.1 177 35.0
FAN14G5828 Fragaria x ananassa HOM05D007657 ORTHO05D009471 1.1e-17 94.7 177 35.0
CANSAT64G1489 Cannabis sativa HOM05D007657 ORTHO05D009471 1.4e-17 94.4 112 44.6
CAN.G86.24 Capsicum annuum HOM05D007657 ORTHO05D009471 1.4e-17 94.4 118 42.4
Gohir.D02G186500 Gossypium hirsutum HOM05D007657 ORTHO05D009471 1.4e-17 94.4 199 35.7
Gorai.005G208700 Gossypium raimondii HOM05D007657 ORTHO05D009471 1.8e-17 94.0 200 35.5
HanXRQChr15g0479591 Helianthus annuus HOM05D007657 ORTHO05D009471 1.8e-17 94.0 183 37.7
Medtr2g089070 Medicago truncatula HOM05D007657 ORTHO05D009471 1.8e-17 94.0 149 38.9
FAN02G3547 Fragaria x ananassa HOM05D007657 ORTHO05D009471 2.4e-17 93.6 174 35.6
Psat0s3329g0040 Pisum sativum HOM05D007657 ORTHO05D009471 2.4e-17 93.6 247 33.6
Solyc07g052930.3 Solanum lycopersicum HOM05D007657 ORTHO05D009471 4.0e-17 92.8 127 40.2
PGSC0003DMG400026164 Solanum tuberosum HOM05D007657 ORTHO05D009471 5.2e-17 92.4 127 40.9
MBI18_g21101_MAGBIO Magnolia biondii HOM05D007657 ORTHO05D009471 6.8e-17 92.0 196 38.8
QL08p034229 Quercus lobata HOM05D007657 ORTHO05D009471 8.9e-17 91.7 246 30.9
FAN09G3022 Fragaria x ananassa HOM05D007657 ORTHO05D009471 1.5e-16 90.9 176 34.1
Glyma.12G196900 Glycine max HOM05D007657 ORTHO05D009471 1.5e-16 90.9 201 35.8
SGA_v2.0_scaffold159G37602 Striga asiatica HOM05D007657 ORTHO05D009471 5.8e-16 89.0 155 36.1
unitig_62.g23194 Utricularia gibba HOM05D007657 ORTHO05D009471 9.9e-16 88.2 107 46.7
Cc05_g05320 Coffea canephora HOM05D007657 ORTHO05D009471 1.3e-15 87.8 160 38.1
FAN05G3329 Fragaria x ananassa HOM05D007657 ORTHO05D009471 1.7e-15 87.4 173 36.4
Oeu034340.1 Olea europaea HOM05D007657 ORTHO05D009471 2.2e-15 87.0 242 29.3
Sc12g0002470 Simmondsia chinensis HOM05D007657 ORTHO05D009471 2.9e-15 86.7 181 33.1
Nitab4.5_0003429g0020 Nicotiana tabacum HOM05D007657 ORTHO05D009471 4.9e-15 85.9 261 30.3
Peaxi162Scf00007g01411 Petunia axillaris HOM05D007657 ORTHO05D009471 4.9e-15 85.9 226 30.5
Lalb_Chr14g0375601 Lupinus albus HOM05D007657 ORTHO05D009471 8.4e-15 85.1 107 43.9
ATR0804G080 Amborella trichopoda HOM05D007657 ORTHO05D009471 1.9e-14 84.0 127 43.3
Aqoxy7G03995 Aquilegia oxysepala HOM05D007657 ORTHO05D009471 2.4e-14 83.6 120 39.2
Sopen07g026480 Solanum pennellii HOM05D007657 ORTHO05D009471 3.2e-14 83.2 247 28.3
HPP92_000868 Vanilla planifolia HOM05D007657 ORTHO05D009471 3.2e-14 83.2 271 29.9
SalBow1G6397 Salvia bowleyana HOM05D007657 ORTHO05D009471 4.1e-14 82.8 135 38.5
Prupe.3G222500 Prunus persica HOM05D007657 ORTHO05D009471 3.5e-13 79.7 287 28.6
Nn012s41456 Nelumbo nucifera HOM05D020747 ORTHO05D009471 1.3e-12 77.8 95 43.2
Nn1g02822 Nelumbo nucifera HOM05D020747 ORTHO05D009471 1.3e-12 77.8 95 43.2
SGA_v2.0_scaffold4400G54479 Striga asiatica HOM05D007657 ORTHO05D009471 3.0e-12 76.6 143 37.1
Cfa021139 Carpinus fangiana HOM05D007657 ORTHO05D009471 3.6e-10 69.7 116 33.6
Psat7g073040 Pisum sativum HOM05D007657 ORTHO05D009471 3.6e-10 69.7 80 48.8
Cfa019641 Carpinus fangiana HOM05D007657 ORTHO05D009471 1.1e-09 68.2 124 37.1
Migut.H01205 Erythranthe guttata HOM05D007657 ORTHO05D009471 6.9e-09 65.5 79 39.2
Psat7g073080 Pisum sativum HOM05D007657 ORTHO05D009471 9.0e-09 65.1 87 41.4
ATR0772G185 Amborella trichopoda HOM05D007657 ORTHO05D009471 1.5e-08 64.3 74 51.4
Actinidia30501 Actinidia chinensis HOM05D007657 ORTHO05D009471 3.4e-08 63.2 162 30.9
FAN19G0836 Fragaria x ananassa HOM05D007657 ORTHO05D009471 2.2e-07 60.5 113 37.2
COL.COLO4_22896 Corchorus olitorius HOM05D003734 ORTHO05D004270 2.9e-07 60.1 95 40.0
FvH4_1g29760 Fragaria vesca HOM05D007657 ORTHO05D009471 2.9e-07 60.1 113 37.2
Nitab4.5_0001134g0150 Nicotiana tabacum HOM05D007657 ORTHO05D009471 4.9e-07 59.3 107 34.6
Thecc.07G180300 Theobroma cacao HOM05D003734 ORTHO05D004270 5.4e-06 55.8 109 34.9
PGR042G0132 Punica granatum HOM05D007657 ORTHO05D009471 7.1e-06 55.5 123 35.8
Migut.M01923 Erythranthe guttata HOM05D003734 ORTHO05D004270 9.3e-06 55.1 114 36.0
PSO675G3350 Papaver somniferum HOM05D003734 ORTHO05D004270 9.3e-06 55.1 124 35.5


User provided reference genes

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