Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 3.7e-182 642.5 689 100.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 9.5e-146 521.5 386 85.0
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 1.5e-143 514.2 343 93.9
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 4.6e-140 502.7 382 85.6
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.2e-132 478.0 384 80.2
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 2.1e-132 477.2 384 80.5
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 2.7e-132 476.9 386 79.8
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.2e-129 468.0 360 86.7
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.1e-129 467.2 386 78.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.1e-129 467.2 386 78.8
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 2.4e-128 463.8 350 86.9
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 3.2e-125 453.4 384 78.1
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 4.2e-125 453.0 372 78.0
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.1e-101 375.2 319 80.3
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.8e-88 331.3 341 62.2
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.8e-83 314.7 329 66.0
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 9.7e-82 308.9 329 62.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.7e-82 308.9 329 62.0
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 2.0e-79 301.2 320 60.9
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 7.7e-79 299.3 356 57.3
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.7e-78 298.1 322 60.6
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 5.0e-78 296.6 320 60.9
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 4.7e-76 290.0 336 59.8
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.0e-75 288.9 329 59.3
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.4e-75 288.5 318 59.7
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 3.9e-75 287.0 312 61.2
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 1.5e-74 285.0 324 59.6
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.0e-74 284.6 323 58.5
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 5.3e-72 276.6 338 45.6
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.2e-68 265.4 314 62.4
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 9.7e-66 255.8 329 55.3
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 6.3e-65 253.1 310 59.0
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 6.3e-65 253.1 266 65.4
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 2.2e-62 244.6 264 59.1
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 7.2e-61 239.6 261 61.3
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 7.2e-61 239.6 264 58.7
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.6e-60 238.4 267 62.5
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.0e-59 235.7 260 61.2
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.3e-59 234.6 303 56.8
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 3.0e-59 234.2 272 66.5
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 4.0e-59 233.8 281 58.4
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.5e-58 231.9 275 59.6
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 9.8e-58 229.2 266 61.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 9.8e-58 229.2 267 61.8
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-57 228.8 259 62.5
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 3.7e-57 227.3 273 59.3
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 3.7e-57 227.3 263 54.8
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.3e-57 226.1 267 61.0
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.8e-56 224.9 236 66.9
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 2.4e-56 224.6 259 61.8
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 3.1e-56 224.2 268 61.6
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.1e-56 224.2 267 60.7
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.1e-56 224.2 267 60.7
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 4.1e-56 223.8 259 61.4
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.1e-56 223.8 291 56.4
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.2e-55 222.2 295 60.3
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 3.8e-54 217.2 291 55.7
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 3.8e-54 217.2 257 63.8
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.5e-53 214.5 249 63.1
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.5e-53 214.5 269 59.1
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.8e-52 211.1 269 56.5
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 8.0e-52 209.5 307 55.4
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.4e-51 208.8 263 60.8
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 5.2e-51 206.8 293 55.3
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 8.9e-51 206.1 250 64.8
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 4.4e-50 203.8 307 53.1
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 7.5e-50 203.0 293 54.3
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 2.2e-49 201.4 261 59.4
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 2.2e-49 201.4 300 55.3
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.8e-49 201.1 274 55.5
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 1.1e-48 199.1 273 58.6
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.4e-48 198.7 258 59.7
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 1.4e-48 198.7 288 52.4
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.8e-48 198.4 266 58.6
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.4e-48 198.0 260 59.6
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 2.0e-47 194.9 258 57.4
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.7e-46 191.8 281 53.0
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.3e-46 191.4 261 55.2
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.9e-45 188.3 285 55.8
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 4.3e-45 187.2 254 57.1
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 4.9e-41 173.7 227 59.9
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 6.4e-41 173.3 294 37.1
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.4e-40 172.2 285 53.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.4e-40 171.4 285 53.7
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 2.4e-40 171.4 217 65.9
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 7.0e-40 169.9 224 60.3
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 3.5e-39 167.5 222 64.0
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 6.0e-39 166.8 220 63.6
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.3e-38 165.6 222 62.6
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 3.9e-38 164.1 220 59.1
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 2.5e-37 161.4 218 64.7
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.3e-35 154.8 153 51.6
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 3.1e-35 154.5 231 58.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 4.0e-35 154.1 312 43.9
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.5e-34 152.1 117 65.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.0e-34 151.8 338 42.6
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 7.5e-34 149.8 311 36.3
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.3e-33 149.1 327 45.6
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.9e-32 145.2 165 46.7
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.2e-31 142.5 303 32.7
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.6e-31 142.1 220 54.5
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 3.1e-19 101.3 90 53.3
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.6e-18 98.2 98 50.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 9.9e-18 96.3 84 51.2
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 3.2e-16 91.3 122 44.3
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 4.7e-12 77.4 58 63.8
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.1e-11 76.3 104 45.2
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 6.9e-11 73.6 163 26.4
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 1.2e-10 72.8 59 67.8
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 3.5e-07 61.2 58 51.7
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 3.5e-07 61.2 58 51.7
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.6e-07 60.8 57 49.1
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 7.8e-07 60.1 48 56.2
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 5.1e-06 57.4 102 31.4


User provided reference genes

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