Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 0.0e+00 1107.8 563 100.0
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 0.0e+00 1082.0 563 97.2
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 3.9e-312 1074.7 563 96.1
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.0e-307 1059.3 563 94.8
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 2.0e-306 1055.0 563 94.3
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.3e-305 1052.4 563 94.1
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 2.8e-305 1051.2 563 94.0
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 1.8e-304 1048.5 563 93.6
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 1.9e-301 1038.5 561 93.6
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 7.2e-301 1036.6 563 92.5
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 4.1e-296 1020.8 564 90.6
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 9.1e-296 1019.6 585 89.2
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.1e-272 943.0 570 84.2
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 3.0e-246 855.1 575 76.3
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.4e-243 846.3 572 75.7
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 6.8e-243 844.0 571 75.1
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.9e-243 843.6 572 75.3
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 1.3e-241 839.7 573 75.6
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 6.4e-241 837.4 568 75.9
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 8.4e-241 837.0 571 75.1
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.4e-240 836.3 574 74.9
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 3.2e-240 835.1 568 75.7
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 1.6e-239 832.8 569 75.6
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 4.6e-239 831.2 573 74.3
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.0e-238 830.1 573 73.8
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.3e-238 828.9 572 74.7
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 1.9e-237 825.9 573 73.6
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 2.5e-237 825.5 573 73.8
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 7.3e-237 823.9 572 74.8
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 1.2e-236 823.2 570 74.9
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.6e-236 822.8 570 73.9
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 8.1e-236 820.5 573 74.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 8.1e-236 820.5 570 74.2
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.4e-235 819.7 570 74.2
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.4e-235 819.7 577 73.7
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 2.2e-233 812.4 568 73.6
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 8.4e-233 810.4 573 71.6
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.9e-232 809.3 561 74.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 3.2e-232 808.5 572 72.9
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 9.3e-232 807.0 579 72.5
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.7e-231 805.4 640 66.9
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 7.8e-231 803.9 574 71.1
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 2.3e-230 802.4 562 72.8
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 3.0e-230 802.0 566 72.6
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.9e-230 801.6 569 72.2
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 8.7e-230 800.4 566 71.7
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 8.7e-230 800.4 569 71.0
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 2.5e-229 798.9 569 72.2
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 9.6e-229 797.0 575 72.3
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.8e-228 794.7 549 74.1
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 6.2e-228 794.3 567 72.0
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 6.2e-228 794.3 555 74.1
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.4e-227 793.1 574 72.1
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 2.4e-227 792.3 573 70.2
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.5e-226 789.6 573 70.0
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 8.4e-225 783.9 632 66.8
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.4e-224 783.1 551 73.9
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.4e-224 783.1 568 71.7
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 1.9e-224 782.7 552 73.2
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 7.9e-223 777.3 567 69.8
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.3e-222 775.8 592 68.6
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.0e-222 775.4 573 70.7
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 3.9e-222 775.0 557 71.1
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.5e-221 773.1 559 70.8
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 3.3e-221 771.9 567 69.3
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 4.3e-221 771.5 565 70.4
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 5.3e-219 764.6 563 70.0
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 6.9e-219 764.2 563 69.8
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 3.4e-218 761.9 563 68.9
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 3.4e-218 761.9 564 69.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.3e-217 760.0 572 70.8
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.9e-217 758.1 576 68.9
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 4.9e-217 758.1 618 66.5
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.0e-215 751.1 569 68.5
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 7.9e-215 750.7 568 68.8
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.1e-214 748.0 573 69.8
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 4.8e-212 741.5 591 67.0
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 5.3e-211 738.0 559 69.2
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.7e-209 733.0 558 68.8
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.6e-207 726.5 540 71.1
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 2.4e-203 712.6 566 66.3
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 2.9e-201 705.7 566 63.4
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.8e-201 705.3 575 66.6
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 8.5e-201 704.1 612 63.7
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 2.5e-197 692.6 589 64.3
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 4.3e-197 691.8 517 68.9
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 9.7e-197 690.6 554 66.2
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 8.8e-182 641.0 433 76.7
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.1e-171 605.9 444 72.1
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 2.2e-169 599.7 567 55.6
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 2.1e-167 593.2 690 50.3
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 4.8e-164 582.0 321 92.5
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.4e-163 580.5 568 54.2
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.1e-152 544.3 561 53.7
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 1.4e-147 527.3 568 50.0
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.0e-137 494.6 555 50.6
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 4.3e-104 382.9 273 67.4
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 9.3e-99 365.2 277 68.6
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.3e-87 328.2 277 61.4
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 2.2e-84 317.4 225 73.3
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 2.5e-67 260.8 197 67.5
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 9.4e-51 205.7 164 64.6
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 9.8e-48 195.7 302 45.4
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 1.7e-47 194.9 242 43.4
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 5.2e-41 173.3 116 73.3
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 5.7e-40 169.9 120 70.8
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.6e-37 161.8 120 68.3
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 8.6e-36 156.0 149 54.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 5.2e-33 146.7 129 57.4
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 9.2e-30 136.0 117 62.4
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.6e-26 125.2 178 46.1
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-23 115.5 174 42.5
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.3e-23 115.5 94 60.6
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.1e-22 110.5 191 39.8
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 5.2e-17 93.6 123 42.3
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 6.4e-15 86.7 137 42.3
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 8.4e-15 86.3 84 56.0
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.9e-14 85.1 95 46.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 1.0e-12 79.3 45 82.2
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 9.6e-11 72.8 57 73.7
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-10 72.0 212 29.7
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.4e-09 68.9 51 74.5
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.4e-09 68.9 129 36.4
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.1e-09 67.8 176 31.2
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 5.2e-09 67.0 37 89.2
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 5.2e-09 67.0 158 34.8
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 4.9e-07 60.5 93 37.6


User provided reference genes

Program Settings