Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 1.7e-100 369.4 192 100.0
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 1.5e-96 356.3 192 97.4
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 8.1e-87 323.9 196 87.8
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.1e-86 323.6 197 89.8
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 6.9e-86 320.9 196 89.3
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.8e-84 315.1 199 86.4
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-81 306.6 197 86.8
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.8e-81 306.2 199 85.4
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 3.0e-81 305.4 200 85.0
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 5.1e-81 304.7 200 85.0
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 5.1e-81 304.7 197 86.3
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 5.1e-81 304.7 200 85.0
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 2.5e-80 302.4 197 86.3
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 9.6e-80 300.4 197 83.8
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 2.4e-78 295.8 194 84.0
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 9.0e-78 293.9 197 84.8
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.2e-77 293.5 197 84.3
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.2e-77 293.5 197 84.3
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 3.8e-76 288.5 202 80.7
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 6.4e-76 287.7 198 82.3
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 6.4e-76 287.7 198 82.3
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 5.5e-75 284.6 198 78.8
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 9.3e-75 283.9 196 80.1
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.0e-73 278.9 197 77.7
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 4.3e-72 275.0 198 76.8
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 5.5e-67 258.1 204 71.1
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.5e-64 250.0 198 69.7
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 2.5e-64 249.2 209 67.9
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.3e-64 248.8 198 71.7
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 5.7e-64 248.1 198 69.7
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.7e-64 248.1 198 69.7
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.7e-64 248.1 198 71.7
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 7.4e-64 247.7 198 69.7
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.6e-63 246.5 208 67.3
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.6e-63 246.5 196 71.4
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.6e-63 246.5 198 70.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.2e-63 246.1 196 70.9
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.2e-63 246.1 196 70.9
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.8e-63 245.7 198 68.7
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 3.7e-63 245.4 213 66.2
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.3e-63 244.6 197 70.1
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.1e-62 243.8 215 66.0
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.4e-62 243.4 208 67.8
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 1.8e-62 243.0 194 70.6
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.4e-62 242.7 207 68.1
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 4.1e-62 241.9 194 70.6
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 6.9e-62 241.1 194 73.2
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 6.9e-62 241.1 208 66.3
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.5e-61 240.0 201 67.2
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.0e-61 239.6 195 71.3
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 3.4e-61 238.8 194 68.6
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 4.5e-61 238.4 191 69.1
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 7.6e-61 237.7 203 67.0
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 1.7e-60 236.5 213 65.3
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.9e-60 235.7 212 64.6
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 2.9e-60 235.7 207 66.2
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 5.0e-60 235.0 210 64.8
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.5e-60 234.6 209 64.1
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 8.5e-60 234.2 202 66.3
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.1e-59 233.8 164 76.8
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.4e-59 233.4 194 68.6
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 2.5e-59 232.6 205 67.8
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 3.2e-59 232.3 192 67.2
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 4.2e-59 231.9 195 68.2
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 4.2e-59 231.9 211 63.0
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 7.2e-59 231.1 212 63.2
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 2.1e-58 229.6 195 68.7
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.7e-58 229.2 199 67.8
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 3.6e-58 228.8 206 65.5
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 3.6e-58 228.8 211 64.5
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 4.6e-58 228.4 208 65.9
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 4.6e-58 228.4 212 63.2
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 7.9e-58 227.6 194 66.0
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 7.9e-58 227.6 201 64.2
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.0e-57 227.3 192 65.6
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 1.0e-57 227.3 194 66.5
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 1.4e-57 226.9 208 64.4
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.4e-57 226.9 203 63.1
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.8e-57 226.5 209 65.6
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.8e-57 226.5 196 66.8
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.8e-57 226.5 194 66.0
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.8e-57 226.5 194 66.5
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-57 225.7 174 71.8
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 6.7e-57 224.6 209 64.6
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 6.7e-57 224.6 207 64.7
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 8.8e-57 224.2 199 65.3
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 8.8e-57 224.2 199 65.3
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 8.8e-57 224.2 199 65.3
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-56 223.8 206 64.1
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 1.1e-56 223.8 146 78.1
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.9e-56 223.0 192 65.6
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.9e-56 223.0 194 64.9
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 2.5e-56 222.6 208 62.0
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.5e-56 222.6 192 67.7
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.3e-56 222.2 210 64.3
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 3.3e-56 222.2 165 76.4
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 4.3e-56 221.9 211 64.5
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 5.7e-56 221.5 203 64.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 7.4e-56 221.1 192 65.6
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 9.7e-56 220.7 202 66.3
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 1.7e-55 219.9 198 62.6
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 2.2e-55 219.5 203 61.6
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.8e-55 219.2 193 63.7
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 3.7e-55 218.8 156 74.4
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.8e-55 218.4 204 65.2
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 4.8e-55 218.4 194 64.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 4.8e-55 218.4 206 63.1
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 8.2e-55 217.6 205 63.4
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.8e-54 216.5 206 63.1
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 2.4e-54 216.1 181 68.0
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.1e-54 215.7 203 64.0
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 3.1e-54 215.7 192 62.5
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 5.3e-54 214.9 192 65.1
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 6.9e-54 214.5 202 62.9
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 9.1e-54 214.2 202 62.9
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.5e-53 213.4 198 65.7
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 2.0e-53 213.0 192 62.5
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.5e-53 211.8 104 98.1
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 7.7e-53 211.1 115 90.4
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 1.0e-52 210.7 195 62.1
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.2e-52 209.5 104 97.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 3.8e-52 208.8 104 96.2
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 5.0e-52 208.4 205 62.0
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 8.5e-52 207.6 202 61.4
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-51 207.2 104 97.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.1e-51 207.2 111 89.2
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.9e-51 206.5 104 95.2
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.2e-50 203.8 193 60.6
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.6e-50 203.4 192 59.9
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 7.9e-50 201.1 192 59.4
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.0e-49 200.7 164 68.9
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.0e-49 200.7 192 57.3
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.0e-49 199.1 112 88.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.5e-48 196.8 189 62.4
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.4e-46 190.3 103 92.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.4e-46 189.5 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.2e-43 179.1 104 80.8
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.6e-42 176.8 119 72.3
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.9e-41 172.2 170 57.6
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 8.8e-41 171.0 207 53.6
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.1e-40 170.6 191 56.0
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.3e-39 167.2 192 51.6
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.6e-37 159.5 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.9e-35 153.3 197 46.7
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 6.7e-33 144.8 115 60.0
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 2.2e-31 139.8 149 55.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.3e-30 135.2 121 55.4
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.3e-23 114.0 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 5.0e-20 102.1 137 42.3
BolC1t05144H Brassica oleracea HOM05D004814 ORTHO05D005778 2.7e-13 79.7 104 56.7
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 2.9e-07 59.7 192 32.3


User provided reference genes

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