Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 9.5e-150 533.5 270 100.0
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 6.2e-141 504.2 274 93.8
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 7.8e-136 487.3 274 91.2
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 7.6e-131 470.7 274 87.6
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 8.4e-122 440.7 277 84.8
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.9e-121 439.5 275 82.9
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.9e-121 439.5 275 82.9
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.9e-121 439.5 275 82.9
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.2e-120 436.8 275 83.3
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 5.1e-119 431.4 275 82.9
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-118 430.3 275 82.2
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 2.9e-114 415.6 292 76.7
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.1e-104 382.9 279 78.9
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.1e-104 382.9 279 78.9
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.1e-104 382.9 279 78.9
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 1.8e-103 379.8 280 78.9
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 3.0e-103 379.0 280 78.9
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.0e-98 364.0 287 71.1
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 4.1e-92 342.0 290 67.6
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 4.7e-64 248.8 288 55.6
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 2.2e-61 240.0 293 54.6
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 2.8e-61 239.6 293 54.6
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.7e-61 239.2 289 56.7
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 4.8e-61 238.8 301 54.2
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 4.8e-61 238.8 301 54.2
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.1e-60 237.7 301 52.8
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 2.0e-59 233.4 290 55.2
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.0e-58 231.1 299 52.5
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 3.2e-57 226.1 300 52.3
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 2.8e-53 213.0 265 53.6
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 3.7e-53 212.6 150 79.3
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.0e-47 194.5 269 51.3
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 3.0e-47 193.0 289 46.0
BcaC09g51982 Brassica carinata HOM05D008873 ORTHO05D005982 6.6e-34 148.7 100 79.0
C01p06990 Brassica napus HOM05D008873 ORTHO05D005982 1.6e-32 144.1 108 72.2
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 3.1e-31 139.8 275 38.9
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.4e-28 131.0 163 54.0
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 2.8e-24 116.7 329 32.5
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 5.4e-20 102.4 283 30.0
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.6e-19 100.9 325 28.3
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 2.7e-19 100.1 346 28.9
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.7e-19 100.1 282 30.9
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 4.6e-19 99.4 288 32.3
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.0e-18 98.2 324 28.4
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.7e-18 97.4 322 28.6
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 6.6e-18 95.5 301 30.9
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 6.6e-18 95.5 326 29.8
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 6.6e-18 95.5 334 29.9
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 8.6e-18 95.1 344 28.8
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.5e-17 94.4 324 29.3
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.5e-17 94.4 325 28.0
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 3.3e-17 93.2 325 29.5
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 7.3e-17 92.0 329 28.0
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 9.5e-17 91.7 300 28.0
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.2e-16 91.3 334 29.6
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 2.8e-16 90.1 318 28.9
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 2.8e-16 90.1 297 28.6
BolC3t12886H Brassica oleracea HOM05D008873 ORTHO05D005982 2.3e-15 87.0 87 59.8
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 2.3e-15 87.0 317 31.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 3.1e-15 86.7 317 29.3
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 6.8e-15 85.5 121 44.6
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.0e-14 84.0 270 28.9
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 2.6e-14 83.6 334 27.5
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 2.6e-14 83.6 289 30.8
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 4.4e-14 82.8 189 33.3
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 4.4e-14 82.8 308 28.2
C03p03440 Brassica napus HOM05D008873 ORTHO05D005982 1.3e-13 81.3 84 59.5
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.3e-13 81.3 229 30.6
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.7e-13 80.9 269 27.1
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 2.9e-13 80.1 332 28.3
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 3.7e-13 79.7 210 32.4
BolC1t05243H Brassica oleracea HOM05D008873 ORTHO05D005982 4.9e-13 79.3 62 67.7
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 4.9e-13 79.3 294 27.2
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 6.4e-13 79.0 115 41.7
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 8.4e-13 78.6 313 26.2
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.4e-12 77.8 330 27.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 1.4e-12 77.8 287 26.1
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.9e-12 77.4 313 27.5
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.9e-12 77.4 276 28.6
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 5.4e-12 75.9 198 31.3
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 9.2e-12 75.1 138 34.1
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 9.2e-12 75.1 228 30.3
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 1.2e-11 74.7 178 34.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 2.1e-11 73.9 216 32.4
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 2.1e-11 73.9 323 26.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.7e-11 73.6 219 32.0
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 4.6e-11 72.8 95 43.2
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 6.0e-11 72.4 288 28.1
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 7.8e-11 72.0 261 28.4
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.0e-10 71.6 334 25.4
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.0e-10 71.6 287 27.5
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.0e-10 71.6 287 27.5
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 1.0e-10 71.6 301 28.6
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-10 71.2 108 38.9
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.7e-10 70.9 110 38.2
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 2.3e-10 70.5 219 31.1
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 2.3e-10 70.5 210 31.4
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 3.0e-10 70.1 250 28.0
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 5.1e-10 69.3 126 34.9
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 6.6e-10 68.9 101 37.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 6.6e-10 68.9 217 30.9
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.1e-09 68.2 108 37.0
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.1e-09 68.2 108 37.0
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.5e-09 67.8 194 34.0
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 2.5e-09 67.0 185 31.4
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 2.5e-09 67.0 322 27.6
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 3.3e-09 66.6 185 31.9
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 4.3e-09 66.2 284 25.0
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 7.3e-09 65.5 271 25.1
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 9.6e-09 65.1 220 31.8
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 1.2e-08 64.7 268 26.9
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.2e-08 64.7 110 40.0
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.1e-08 63.9 199 30.2
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.8e-08 63.5 108 39.8
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 4.7e-08 62.8 251 29.1
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 4.7e-08 62.8 219 30.6
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 6.2e-08 62.4 309 26.9
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.1e-07 61.6 244 27.9
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.4e-07 61.2 119 36.1
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 2.4e-07 60.5 109 40.4
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 2.4e-07 60.5 105 41.0
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 4.0e-07 59.7 123 28.5
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 4.0e-07 59.7 171 29.2
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 5.2e-07 59.3 113 37.2
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 6.8e-07 58.9 113 37.2
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 6.8e-07 58.9 273 28.9
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.5e-06 57.8 95 40.0
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 1.5e-06 57.8 106 36.8
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 1.5e-06 57.8 122 34.4
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 2.6e-06 57.0 120 33.3
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 3.4e-06 56.6 113 34.5
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 4.4e-06 56.2 112 31.2
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 4.4e-06 56.2 116 29.3
CDE04G1684 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 5.8e-06 55.8 127 30.7
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 5.8e-06 55.8 106 34.0
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 7.6e-06 55.5 123 35.0
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 7.6e-06 55.5 96 40.6
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 7.6e-06 55.5 116 34.5
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 9.9e-06 55.1 120 32.5
Oeu056557.1 Olea europaea HOM05D004414 ORTHO05D001824 9.9e-06 55.1 140 32.1
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 9.9e-06 55.1 163 30.1


User provided reference genes

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