Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 0.0e+00 2090.5 1104 100.0
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 0.0e+00 1898.6 1109 89.8
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 0.0e+00 1756.9 1107 82.5
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 0.0e+00 1667.1 1102 78.8
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 0.0e+00 1645.6 1101 77.6
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 0.0e+00 1644.4 1112 77.0
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 0.0e+00 1528.5 1012 79.0
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 0.0e+00 1480.3 944 81.5
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 0.0e+00 1456.4 1105 74.5
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 0.0e+00 1322.8 1110 66.4
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 0.0e+00 1241.1 1135 61.4
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 1.4e-263 913.7 1213 45.6
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 1.7e-258 896.7 1217 47.6
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 3.6e-256 889.0 1218 44.8
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 2.4e-255 886.3 1231 44.2
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 5.8e-254 881.7 828 56.8
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 6.4e-253 878.2 1190 45.6
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 4.0e-247 859.0 1191 45.9
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 2.7e-243 846.3 1222 42.8
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 4.0e-239 832.4 1195 43.1
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 3.0e-234 816.2 927 49.9
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 3.5e-227 792.7 1209 41.3
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.7e-221 773.9 1267 40.8
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 3.8e-221 772.7 923 48.6
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.1e-220 771.2 1209 42.1
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 4.6e-219 765.8 1243 40.5
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 1.0e-218 764.6 1225 41.1
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 2.3e-218 763.5 954 47.7
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 3.3e-217 759.6 1090 42.6
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 2.8e-216 756.5 1180 41.9
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 5.0e-213 745.7 862 49.7
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 2.8e-208 729.9 1236 39.6
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 9.1e-207 724.9 1204 39.0
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 2.9e-205 719.9 1262 39.0
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.0e-202 711.4 969 45.2
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 3.0e-202 709.9 1205 39.6
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 3.9e-202 709.5 1210 38.7
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 9.7e-201 704.9 821 48.5
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 7.0e-199 698.7 926 45.1
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 9.1e-199 698.4 1101 42.2
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 9.1e-199 698.4 818 47.4
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 3.8e-197 693.0 921 45.8
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 6.3e-192 675.6 865 45.8
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 2.4e-191 673.7 1267 36.5
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 2.9e-189 666.8 932 42.3
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 4.7e-187 659.4 823 46.4
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 4.7e-187 659.4 722 50.7
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 9.8e-185 651.7 823 46.1
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 2.2e-184 650.6 1190 38.2
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.8e-183 647.5 821 45.8
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 2.4e-183 647.1 815 46.4
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 1.6e-182 644.4 1217 36.3
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 2.8e-179 633.6 1202 36.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 4.0e-178 629.8 965 42.1
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 5.4e-175 619.4 1230 36.5
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 5.6e-172 609.4 965 41.5
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 2.2e-168 597.4 1146 35.9
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 2.5e-164 583.9 928 38.4
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 1.6e-163 581.3 989 38.1
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 4.7e-163 579.7 1183 35.0
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 2.0e-161 574.3 1097 37.3
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 2.9e-160 570.5 647 47.1
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 1.1e-154 552.0 971 38.3
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 5.4e-143 513.1 841 39.4
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 3.1e-138 497.3 883 36.5
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.1e-134 484.6 944 35.2
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.0e-133 482.3 886 35.1
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.1e-130 470.7 513 49.9
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 9.9e-129 465.7 757 39.9
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 3.8e-128 463.8 993 33.8
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 9.3e-127 459.1 831 38.4
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 6.7e-125 453.0 430 54.9
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 3.0e-117 427.6 1010 31.3
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 3.7e-115 420.6 658 39.7
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 7.4e-108 396.4 485 46.2
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 7.0e-82 310.1 475 42.7
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 4.0e-69 267.7 166 83.7
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 1.1e-66 259.6 391 41.4
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 4.0e-61 241.1 744 30.4
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 5.6e-55 220.7 193 59.6
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 8.0e-54 216.9 184 65.8
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 2.2e-51 208.8 890 25.2
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 1.9e-42 179.1 184 50.5
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 5.4e-42 177.6 184 50.0
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 6.0e-41 174.1 184 49.5
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 3.1e-37 161.8 599 26.2
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 3.3e-31 141.7 292 33.6
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 5.4e-26 124.4 227 39.2
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 2.7e-25 122.1 78 79.5
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 3.5e-25 121.7 565 23.7
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 1.7e-24 119.4 89 67.4
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 2.3e-24 119.0 88 67.0
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 6.6e-24 117.5 101 57.4
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.9e-23 115.9 88 69.3
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 2.5e-23 115.5 90 70.0
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 7.4e-15 87.4 102 50.0
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 2.9e-11 75.5 77 51.9
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.5e-10 71.2 57 54.4
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 7.1e-10 70.9 136 32.4
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 3.5e-09 68.6 475 24.0
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 4.6e-09 68.2 200 27.5
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 7.9e-09 67.4 179 30.7
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 1.6e-06 59.7 119 30.3
MCO16G645 Micromonas commoda HOM05D014975 ORTHO05D016505 2.8e-06 58.9 172 28.5
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 6.2e-06 57.8 141 23.4


User provided reference genes

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