Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 0.0e+00 1388.2 697 100.0
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 0.0e+00 1294.3 697 92.8
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 0.0e+00 1176.8 702 84.8
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 0.0e+00 1154.4 702 83.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 0.0e+00 1150.6 701 83.0
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 0.0e+00 1082.8 714 77.0
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 9.5e-312 1073.2 709 77.3
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.4e-306 1055.8 679 78.6
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.1e-303 1046.2 679 78.5
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.5e-303 1045.8 698 77.1
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 4.3e-295 1017.7 704 74.4
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 6.9e-261 904.0 709 64.5
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 6.3e-254 880.9 509 85.7
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 2.9e-227 792.3 700 56.3
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.5e-226 789.3 709 55.3
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.1e-221 772.3 709 55.3
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.6e-220 770.0 703 54.8
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.2e-217 760.4 709 54.7
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 8.0e-217 757.7 708 53.5
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.4e-215 751.9 712 52.8
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.8e-213 746.5 717 53.1
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.3e-211 740.3 705 54.3
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 3.8e-211 738.8 678 54.4
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.5e-210 736.1 697 51.8
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 6.1e-209 731.5 710 52.1
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.7e-207 724.9 733 51.6
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.2e-206 723.0 733 51.4
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 3.7e-206 722.2 708 51.6
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 4.9e-206 721.8 697 50.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 5.4e-205 718.4 713 52.0
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 3.8e-203 712.2 699 51.1
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.2e-201 707.2 760 49.6
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 6.8e-200 701.4 710 50.7
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 2.6e-199 699.5 709 50.4
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 3.4e-199 699.1 709 48.9
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 1.8e-197 693.3 691 49.6
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 5.4e-197 691.8 394 89.6
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.2e-196 690.6 711 50.1
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.6e-196 688.7 709 49.4
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.3e-195 687.2 702 48.3
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.5e-194 683.7 694 50.1
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.5e-194 683.7 707 49.5
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.9e-194 683.3 708 49.0
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.6e-193 680.2 694 50.3
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 2.1e-193 679.9 705 50.2
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.8e-193 679.5 713 48.4
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 3.6e-193 679.1 714 49.3
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 6.2e-193 678.3 699 49.5
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.4e-191 672.5 706 47.3
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 4.9e-190 668.7 702 49.4
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 2.4e-189 666.4 698 48.3
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 4.1e-189 665.6 703 48.8
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 9.2e-189 664.5 712 49.3
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 7.8e-188 661.4 706 46.5
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 8.6e-187 657.9 709 46.8
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.6e-185 653.7 657 49.8
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.7e-185 652.1 690 49.9
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 6.8e-184 648.3 675 51.3
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 3.7e-182 642.5 706 47.5
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 4.1e-181 639.0 698 48.4
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 4.6e-180 635.6 697 48.9
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 7.8e-180 634.8 610 52.5
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 7.8e-180 634.8 693 48.8
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.7e-179 633.6 700 49.0
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.3e-179 633.3 701 46.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.9e-179 632.5 704 48.7
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.0e-172 608.6 702 47.4
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 7.8e-172 608.2 695 46.8
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 5.1e-171 605.5 592 54.7
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 8.1e-169 598.2 705 45.0
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.7e-166 590.5 505 55.4
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 2.3e-163 580.1 694 45.8
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.6e-161 573.9 737 43.8
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 2.8e-161 573.2 707 43.8
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 4.0e-160 569.3 512 52.5
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 7.6e-159 565.1 706 42.9
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.0e-155 554.7 604 46.9
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 4.5e-151 539.3 470 56.0
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 1.6e-148 530.8 458 55.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 7.9e-148 528.5 538 53.3
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 5.1e-147 525.8 448 58.3
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.1e-133 481.5 607 44.6
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.5e-130 471.1 399 57.1
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 1.8e-128 464.2 485 52.0
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.4e-128 463.8 559 43.6
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.1e-125 454.9 442 52.0
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.7e-121 441.0 638 40.0
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 4.5e-119 433.0 643 40.1
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 9.4e-117 425.2 442 52.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 2.7e-116 423.7 492 48.4
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 1.8e-115 421.0 529 43.7
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 3.7e-113 413.3 544 41.9
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 8.8e-107 392.1 499 41.9
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 3.1e-104 383.6 814 32.3
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 2.0e-98 364.4 665 34.1
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 3.4e-90 337.0 773 29.6
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.8e-84 317.4 684 32.3
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.8e-84 317.4 684 32.3
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.3e-83 314.3 698 32.1
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 6.8e-83 312.8 826 28.1
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.3e-77 293.5 230 60.0
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 8.3e-73 279.3 592 31.9
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.4e-72 277.7 393 40.2
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 4.4e-66 256.9 210 59.0
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 3.1e-59 234.2 187 55.6
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.0e-46 192.6 221 47.5
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.3e-46 192.2 322 35.7
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.6e-42 177.9 159 49.1
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.9e-35 153.3 146 48.6
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-33 149.1 131 51.9
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-32 144.8 309 31.4
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 1.2e-31 142.5 148 50.7
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 6.0e-31 140.2 204 37.3
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.1e-29 136.0 112 59.8
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 4.0e-27 127.5 193 41.5
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 9.0e-27 126.3 194 39.2
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 8.4e-25 119.8 89 56.2
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 6.9e-19 100.1 249 29.3
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.2e-18 99.4 136 41.9
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 1.5e-13 82.4 59 54.2
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 2.5e-13 81.6 43 76.7
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.4e-11 75.9 59 49.2
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 1.9e-08 65.5 361 22.2
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 3.2e-08 64.7 459 21.8
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.7e-07 61.6 70 52.9
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 1.4e-06 59.3 328 23.8
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 3.0e-06 58.2 323 23.8
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 3.0e-06 58.2 134 28.4
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 3.0e-06 58.2 362 21.8
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 3.9e-06 57.8 277 23.8
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 5.1e-06 57.4 323 23.8
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 6.7e-06 57.0 327 21.4
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 6.7e-06 57.0 384 21.6
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 6.7e-06 57.0 62 50.0
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 8.8e-06 56.6 361 22.4
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 8.8e-06 56.6 376 21.8


User provided reference genes

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