Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G06690 Arabidopsis thaliana HOM05D001068 ORTHO05D013681 1.1e-101 373.2 188 100.0
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 2.2e-89 332.4 172 97.7
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 2.9e-89 332.0 172 97.7
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 2.6e-85 318.9 172 94.2
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 2.2e-84 315.8 172 91.9
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 6.3e-84 314.3 172 91.3
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 5.3e-83 311.2 172 90.1
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 7.0e-83 310.8 172 90.1
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 1.2e-82 310.1 172 89.5
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 1.6e-82 309.7 172 89.5
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 1.6e-82 309.7 172 90.1
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 2.0e-82 309.3 172 89.5
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 2.0e-82 309.3 172 89.5
BcaC05g24277 Brassica carinata HOM05D001068 ORTHO05D002190 3.5e-82 308.5 172 89.5
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 2.2e-81 305.8 172 87.8
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 7.2e-80 300.8 170 87.6
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 7.2e-80 300.8 172 87.2
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 4.8e-76 288.1 170 83.5
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 6.3e-76 287.7 170 83.5
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 1.2e-74 283.5 170 80.6
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 7.7e-74 280.8 170 82.4
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 7.7e-74 280.8 170 82.4
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 7.7e-74 280.8 170 82.4
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 1.7e-73 279.6 195 72.8
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 1.6e-66 256.5 171 70.8
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 6.5e-65 251.1 171 68.4
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 8.6e-65 250.8 171 69.6
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 1.5e-64 250.0 167 69.5
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 1.5e-64 250.0 171 67.3
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 1.9e-64 249.6 167 70.7
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 2.5e-64 249.2 171 68.4
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 5.5e-64 248.1 171 66.7
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 5.5e-64 248.1 171 69.0
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 5.5e-64 248.1 167 69.5
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 7.2e-64 247.7 167 68.9
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 2.8e-63 245.7 171 67.8
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 4.7e-63 245.0 167 68.3
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 8.0e-63 244.2 172 68.6
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 4.0e-62 241.9 170 66.5
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 6.8e-62 241.1 170 66.5
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 8.8e-62 240.7 170 65.9
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 1.2e-61 240.4 144 83.3
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 1.2e-61 240.4 171 67.8
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 1.5e-61 240.0 171 66.7
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 1.5e-61 240.0 167 68.3
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 4.4e-61 238.4 172 66.3
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 4.4e-61 238.4 171 66.1
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 5.7e-61 238.0 166 68.7
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 5.7e-61 238.0 167 68.3
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 7.5e-61 237.7 169 65.7
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 2.2e-60 236.1 167 66.5
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 3.7e-60 235.3 185 60.5
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 3.7e-60 235.3 171 64.3
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 3.7e-60 235.3 171 66.1
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.7e-60 235.3 170 65.3
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 3.7e-60 235.3 170 65.9
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 8.3e-60 234.2 172 65.1
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 1.1e-59 233.8 172 63.4
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 1.1e-59 233.8 171 65.5
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-59 233.8 170 65.3
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 1.1e-59 233.8 166 65.7
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 1.1e-59 233.8 171 64.9
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 1.4e-59 233.4 169 66.3
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.4e-59 233.4 172 65.1
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 1.4e-59 233.4 171 65.5
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 2.4e-59 232.6 172 64.5
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 2.4e-59 232.6 165 65.5
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 7.0e-59 231.1 170 62.9
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 9.2e-59 230.7 170 64.7
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.2e-58 230.3 172 64.0
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 1.6e-58 229.9 170 62.9
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 1.6e-58 229.9 171 63.2
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 2.0e-58 229.6 170 64.7
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 2.7e-58 229.2 167 64.1
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 3.5e-58 228.8 167 64.7
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 3.5e-58 228.8 170 63.5
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 4.5e-58 228.4 167 65.3
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 7.8e-58 227.6 171 62.6
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 7.8e-58 227.6 172 62.8
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 7.8e-58 227.6 185 57.8
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 1.0e-57 227.3 168 63.7
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 1.0e-57 227.3 170 61.8
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 1.0e-57 227.3 171 61.4
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 1.3e-57 226.9 170 63.5
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 1.3e-57 226.9 170 65.3
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 1.7e-57 226.5 166 62.7
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 1.7e-57 226.5 166 62.7
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 2.3e-57 226.1 171 62.0
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.3e-57 226.1 172 62.8
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 2.9e-57 225.7 171 63.2
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 3.8e-57 225.3 166 61.4
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 6.6e-57 224.6 171 60.2
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 8.6e-57 224.2 171 62.6
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 8.6e-57 224.2 167 64.1
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 1.1e-56 223.8 171 63.7
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 2.5e-56 222.6 171 63.2
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 3.3e-56 222.2 169 60.9
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 4.3e-56 221.9 171 60.8
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.6e-56 221.5 171 61.4
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.3e-56 221.1 171 60.8
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 9.5e-56 220.7 167 62.9
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 9.5e-56 220.7 172 61.0
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 9.5e-56 220.7 168 61.9
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 1.6e-55 219.9 169 62.7
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 2.1e-55 219.5 171 62.0
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 2.1e-55 219.5 166 62.7
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.7e-55 218.4 172 60.5
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 6.1e-55 218.0 186 56.5
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 6.1e-55 218.0 169 62.1
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 2.6e-53 212.6 171 62.0
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 2.6e-53 212.6 170 58.8
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 3.4e-53 212.2 171 61.4
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 3.4e-53 212.2 227 49.3
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 1.3e-52 210.3 166 59.6
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 2.9e-52 209.1 168 58.3
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 2.7e-50 202.6 165 55.2
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 3.5e-50 202.2 167 56.9
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 3.5e-50 202.2 183 56.8
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 1.1e-48 197.2 166 57.2
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.1e-47 193.0 166 57.8
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 2.8e-47 192.6 167 56.3
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 3.6e-47 192.2 148 62.8
MD09G1241500 Malus domestica HOM05D001068 ORTHO05D013681 6.2e-47 191.4 150 64.0
Dinv19990 Davidia involucrata HOM05D001068 ORTHO05D002190 1.5e-45 186.8 172 57.0
SEGI_20994 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 5.8e-45 184.9 169 53.8
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.5e-45 184.5 169 54.4
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 2.9e-44 182.6 144 62.5
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 9.2e-43 177.6 168 53.6
VMungo1127G1678 Vigna mungo HOM05D001068 ORTHO05D002190 2.7e-42 176.0 170 51.8
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 3.5e-42 175.6 170 51.2
BcaC05g24280 Brassica carinata HOM05D001068 ORTHO05D002190 3.0e-41 172.6 163 64.4
HanXRQChr16g0526411 Helianthus annuus HOM05D001068 ORTHO05D013681 1.9e-40 169.9 120 65.8
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 7.3e-40 167.9 171 50.9
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 7.3e-40 167.9 171 50.9
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 7.3e-40 167.9 171 50.9
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 7.3e-40 167.9 167 52.1
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 1.8e-38 163.3 185 49.2
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 7.5e-37 157.9 168 46.4
BcaB02g06788 Brassica carinata HOM05D001068 ORTHO05D002190 1.3e-36 157.1 169 55.6
GSVIVG01023773001 Vitis vinifera HOM05D001068 ORTHO05D013681 6.4e-36 154.8 114 64.0
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 1.6e-34 150.2 161 45.3
BcaC05g24285 Brassica carinata HOM05D001068 ORTHO05D013681 2.5e-32 142.9 73 90.4
BcaC05g24278 Brassica carinata HOM05D001068 ORTHO05D020111 1.6e-26 123.6 128 60.9
Carub.0001s0567 Capsella rubella HOM05D001068 ORTHO05D013681 3.5e-26 122.5 82 75.6
A10p05030 Brassica napus HOM05D001068 ORTHO05D013681 3.9e-25 119.0 86 70.9
Oeu038268.1 Olea europaea HOM05D001068 ORTHO05D013681 7.3e-24 114.8 72 69.4
Dinv02425 Davidia involucrata HOM05D001068 ORTHO05D002190 1.4e-22 110.5 87 63.2
Cc00_g26970 Coffea canephora HOM05D001068 ORTHO05D013681 2.0e-21 106.7 72 68.1
Oeu064840.1 Olea europaea HOM05D001068 ORTHO05D002190 2.0e-21 106.7 87 57.5
RcHm_v2.0_Chr7g0206361 Rosa chinensis HOM05D001068 ORTHO05D020111 2.2e-20 103.2 93 55.9
COL.COLO4_04705 Corchorus olitorius HOM05D001068 ORTHO05D002190 4.2e-19 99.0 103 50.5
GSVIVG01022584001 Vitis vinifera HOM05D001068 ORTHO05D013681 3.5e-18 95.9 80 56.2
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 6.0e-18 95.1 127 37.8
GSVIVG01018579001 Vitis vinifera HOM05D001068 ORTHO05D020111 1.3e-17 94.0 65 69.2
GSVIVG01018581001 Vitis vinifera HOM05D001068 ORTHO05D020111 1.3e-17 94.0 65 69.2
BcaC05g24286 Brassica carinata HOM05D001068 ORTHO05D002190 6.6e-17 91.7 51 90.2
BcaC05g24284 Brassica carinata HOM05D001068 ORTHO05D002190 8.7e-17 91.3 72 70.8
GSVIVG01016325001 Vitis vinifera HOM05D001068 ORTHO05D020111 1.5e-16 90.5 65 66.2
Lsat_1_v5_gn_4_28500 Lactuca sativa HOM05D001068 ORTHO05D013681 4.0e-14 82.4 59 67.8
RcHm_v2.0_Chr6g0266281 Rosa chinensis HOM05D001068 ORTHO05D020111 4.0e-14 82.4 70 58.6
Aa31LG1G8290 Aethionema arabicum HOM05D001068 ORTHO05D013681 2.0e-13 80.1 75 61.3
RcHm_v2.0_Chr6g0266301 Rosa chinensis HOM05D001068 ORTHO05D013681 1.9e-11 73.6 58 62.1
Sc06g0009140 Simmondsia chinensis HOM05D001068 ORTHO05D002190 2.1e-10 70.1 53 66.0
Atru.chr6.2845 Acer truncatum HOM05D001068 ORTHO05D002190 9.6e-08 61.2 50 58.0
Eucgr.L03435 Eucalyptus grandis HOM05D001068 ORTHO05D013681 6.9e-06 55.1 56 48.2


User provided reference genes

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