Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 2.4e-177 625.5 346 100.0
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 6.5e-111 404.8 444 59.5
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 8.0e-109 397.9 422 60.0
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 8.5e-103 377.9 440 56.8
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 1.4e-100 370.5 443 54.0
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 1.7e-98 363.6 421 55.3
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 1.5e-94 350.5 433 52.9
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 1.9e-94 350.1 433 52.9
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 5.5e-94 348.6 424 54.0
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 8.9e-92 341.3 420 53.1
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 2.0e-91 340.1 436 53.9
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 3.4e-91 339.3 450 51.1
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 7.5e-91 338.2 420 52.9
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 4.9e-90 335.5 435 53.6
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 1.5e-86 323.9 431 50.1
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.7e-82 310.5 433 52.2
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 7.0e-81 305.1 413 48.7
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.5e-75 287.3 425 46.8
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 7.5e-75 285.0 429 46.2
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.1e-73 281.2 420 46.0
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 2.6e-59 233.4 350 47.1
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 4.3e-54 216.1 459 36.6
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 1.4e-52 211.1 476 36.1
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.5e-51 207.6 451 36.4
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 9.9e-51 204.9 457 35.0
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 3.8e-50 203.0 463 36.3
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 4.9e-50 202.6 450 36.7
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 1.9e-49 200.7 211 56.9
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 3.2e-49 199.9 464 34.7
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 2.1e-48 197.2 441 35.1
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 1.0e-47 194.9 463 35.4
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.7e-47 194.1 452 36.7
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 3.0e-47 193.4 452 36.5
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 6.6e-47 192.2 458 35.6
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 4.3e-46 189.5 445 35.3
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 5.6e-46 189.1 478 34.7
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 2.8e-45 186.8 487 32.9
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 4.8e-45 186.0 445 34.8
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 6.2e-45 185.7 462 34.8
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 1.1e-44 184.9 459 32.9
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 1.1e-44 184.9 465 34.8
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 1.8e-44 184.1 468 33.8
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 3.1e-44 183.3 456 34.2
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 5.3e-44 182.6 444 34.9
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.2e-43 181.4 442 35.1
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 1.5e-43 181.0 509 33.0
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 2.0e-43 180.6 464 32.5
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 2.0e-43 180.6 460 34.1
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 2.6e-43 180.3 462 34.0
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 5.8e-43 179.1 469 33.5
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 9.9e-43 178.3 464 33.6
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.3e-42 177.9 447 32.7
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 2.2e-42 177.2 455 33.4
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 2.9e-42 176.8 469 32.8
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 3.8e-42 176.4 460 33.7
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 4.9e-42 176.0 455 34.1
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 6.4e-42 175.6 447 32.4
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 1.4e-41 174.5 438 33.8
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 1.4e-41 174.5 522 32.4
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 2.4e-41 173.7 463 36.3
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 4.2e-41 172.9 454 32.6
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 4.2e-41 172.9 440 34.5
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 4.2e-41 172.9 464 33.8
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 5.4e-41 172.6 463 32.6
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 7.1e-41 172.2 461 33.6
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 1.2e-40 171.4 457 33.5
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 2.1e-40 170.6 444 33.6
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 2.7e-40 170.2 466 33.7
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 2.7e-40 170.2 450 34.9
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 3.5e-40 169.9 456 32.2
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 4.6e-40 169.5 446 33.0
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 4.6e-40 169.5 462 33.8
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 6.0e-40 169.1 425 34.8
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 6.0e-40 169.1 470 31.5
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 6.0e-40 169.1 470 31.7
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 7.9e-40 168.7 461 33.2
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.3e-39 167.9 461 32.1
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.3e-39 167.9 448 35.3
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 1.8e-39 167.5 460 31.5
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 3.0e-39 166.8 448 36.6
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 3.9e-39 166.4 455 31.4
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.1e-39 166.0 461 31.9
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 5.1e-39 166.0 429 35.2
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 6.7e-39 165.6 429 34.0
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 5.6e-38 162.5 446 32.3
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 7.4e-38 162.2 476 31.9
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 1.6e-37 161.0 454 34.1
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 1.6e-37 161.0 477 31.9
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.1e-37 160.6 453 33.3
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 3.7e-37 159.8 462 32.3
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 8.1e-37 158.7 461 32.5
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 8.1e-37 158.7 389 33.7
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.4e-36 157.9 397 32.7
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 3.1e-36 156.8 459 32.0
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 4.0e-36 156.4 468 33.1
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 4.0e-36 156.4 483 30.6
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 5.3e-36 156.0 459 31.2
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 6.9e-36 155.6 484 30.0
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 1.2e-35 154.8 440 31.8
BcaC04g24118 Brassica carinata HOM05D004310 ORTHO05D005403 9.9e-35 151.8 221 49.8
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.7e-34 151.0 476 30.9
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 1.7e-34 151.0 447 31.3
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 6.4e-34 149.1 474 32.9
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 4.2e-33 146.4 485 28.9
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 1.6e-32 144.4 495 30.3
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.7e-32 143.7 445 32.6
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 4.6e-32 142.9 395 33.4
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 6.0e-32 142.5 379 33.8
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 7.9e-32 142.1 480 29.2
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 1.8e-31 141.0 221 40.7
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 3.0e-31 140.2 446 30.3
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 3.9e-31 139.8 495 30.1
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 8.7e-31 138.7 355 31.5
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 5.6e-30 136.0 470 30.4
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 7.4e-30 135.6 436 30.5
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 3.7e-29 133.3 125 56.0
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 3.7e-29 133.3 217 48.8
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 3.7e-29 133.3 461 34.3
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 3.7e-29 133.3 470 30.2
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 6.2e-29 132.5 434 30.4
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 2.4e-28 130.6 451 27.9
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 2.0e-27 127.5 503 28.0
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 6.5e-26 122.5 231 36.4
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 1.0e-23 115.2 216 36.1
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.3e-21 108.2 289 34.6
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 1.4e-20 104.8 251 37.1
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.6e-19 100.5 297 32.3
FAN06G2445 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.8e-18 96.7 91 59.3
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.6e-16 91.3 339 31.0
MBI13_g41012_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 2.7e-16 90.5 61 72.1
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 6.1e-16 89.4 273 30.4
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 3.9e-15 86.7 56 80.4
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 3.9e-15 86.7 56 80.4
C09p73290 Brassica napus HOM05D004310 ORTHO05D040128 1.1e-14 85.1 56 76.8
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 1.5e-14 84.7 447 26.2
CARHR249350 Cardamine hirsuta HOM05D004310 ORTHO05D005403 2.5e-14 84.0 50 88.0
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 2.2e-13 80.9 370 27.0
SEGI_04150 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 2.2e-13 80.9 62 67.7
SEGI_12000 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 2.2e-13 80.9 62 67.7
ATR0602G109 Amborella trichopoda HOM05D004310 ORTHO05D005403 8.2e-13 79.0 48 83.3
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 5.3e-12 76.3 176 31.8
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 6.9e-12 75.9 55 69.1
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 6.9e-12 75.9 55 69.1
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 6.9e-12 75.9 55 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 1.5e-11 74.7 171 34.5
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 1.5e-11 74.7 61 68.9
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 4.5e-11 73.2 178 37.1
PSO724G1042 Papaver somniferum HOM05D004310 ORTHO05D005403 4.5e-11 73.2 61 57.4
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.4e-09 68.2 157 33.8
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 1.4e-07 61.6 369 27.6
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 3.0e-07 60.5 60 50.0
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 3.0e-07 60.5 99 39.4
RcHm_v2.0_Chr1g0344721 Rosa chinensis HOM05D004310 ORTHO05D005403 6.7e-07 59.3 47 68.1
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 2.0e-06 57.8 60 51.7
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 3.3e-06 57.0 64 46.9
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 5.7e-06 56.2 65 46.2
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 9.7e-06 55.5 60 50.0


User provided reference genes

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