Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 8.9e-176 620.2 311 100.0
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 6.2e-161 570.9 309 92.6
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 8.6e-155 550.4 307 88.3
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 2.1e-153 545.8 310 88.4
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.8e-153 545.4 310 88.1
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 2.8e-153 545.4 310 88.7
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 2.0e-151 539.3 312 88.1
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 4.6e-148 528.1 310 86.1
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 3.9e-147 525.0 313 85.0
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 1.2e-143 513.5 311 80.4
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 7.1e-125 451.1 231 95.7
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 5.1e-123 444.9 300 70.7
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 5.1e-123 444.9 302 70.9
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 8.7e-123 444.1 314 69.7
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 8.7e-123 444.1 314 69.4
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.9e-122 443.0 303 72.3
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 7.4e-122 441.0 309 70.2
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 7.4e-122 441.0 308 70.5
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 1.6e-121 439.9 311 69.5
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 3.7e-121 438.7 300 70.3
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 4.8e-121 438.3 308 69.5
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 6.2e-121 438.0 312 69.6
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 4.0e-120 435.3 303 70.6
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.0e-120 434.1 304 68.4
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.5e-119 433.3 310 68.7
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.6e-119 432.6 301 70.8
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 3.4e-119 432.2 301 70.4
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 5.8e-119 431.4 300 70.0
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.3e-118 430.3 314 67.8
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 1.3e-118 430.3 308 67.2
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.8e-118 428.7 300 70.0
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.9e-118 428.3 302 69.2
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 8.4e-118 427.6 312 67.0
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.1e-117 427.2 308 68.2
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.5e-117 426.0 306 67.6
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 2.5e-117 426.0 306 67.3
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 3.2e-117 425.6 305 69.2
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 3.2e-117 425.6 300 69.7
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.2e-116 423.7 312 66.3
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.5e-116 422.2 312 66.3
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 4.6e-116 421.8 309 66.0
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 7.9e-116 421.0 313 66.8
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 7.9e-116 421.0 302 67.9
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 7.9e-116 421.0 304 68.1
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.0e-115 420.6 308 65.9
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.8e-115 419.9 312 68.3
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 1.8e-115 419.9 299 68.9
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 2.3e-115 419.5 307 67.4
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 2.3e-115 419.5 312 67.0
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 3.9e-115 418.7 315 67.6
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 3.9e-115 418.7 313 66.8
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 5.1e-115 418.3 305 67.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 6.7e-115 417.9 305 66.6
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 8.7e-115 417.5 303 66.7
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 1.9e-114 416.4 321 66.0
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 4.3e-114 415.2 303 67.0
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 5.7e-114 414.8 306 67.0
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 3.7e-113 412.1 306 67.3
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 4.8e-113 411.8 301 66.1
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 8.2e-113 411.0 307 67.4
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 2.0e-111 406.4 298 65.1
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 2.6e-111 406.0 301 68.1
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 5.9e-111 404.8 300 65.7
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 5.5e-109 398.3 310 63.9
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.2e-109 397.9 302 65.6
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 3.6e-108 395.6 307 65.1
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 3.6e-108 395.6 309 63.1
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 7.9e-108 394.4 309 63.1
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.4e-107 393.7 301 65.8
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 1.8e-107 393.3 298 66.1
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 3.9e-107 392.1 309 62.8
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 5.1e-107 391.7 310 61.9
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 4.3e-106 388.7 305 63.0
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 7.4e-106 387.9 317 61.8
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 1.3e-105 387.1 300 62.7
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 6.3e-105 384.8 300 63.0
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.4e-104 383.6 305 63.3
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 4.1e-104 382.1 304 64.1
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 5.0e-102 375.2 301 60.5
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.4e-101 373.6 314 60.2
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.5e-101 372.9 307 63.5
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.2e-100 370.5 309 60.8
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 8.0e-92 341.3 297 56.2
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.1e-90 337.4 243 67.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 4.4e-90 335.5 311 57.2
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 5.7e-90 335.1 306 57.5
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 5.7e-90 335.1 259 63.7
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 1.5e-85 320.5 246 65.4
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 1.9e-85 320.1 244 66.0
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.6e-82 309.7 417 42.0
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.3e-80 302.0 302 53.6
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.3e-78 297.4 277 54.9
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.9e-78 296.2 312 50.3
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 1.5e-77 293.9 170 88.2
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 6.1e-76 288.5 148 91.9
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 2.6e-74 283.1 242 61.6
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 9.8e-74 281.2 202 66.8
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.2e-73 280.0 309 50.5
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.5e-71 272.7 205 64.9
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 3.4e-66 256.1 171 69.0
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 8.3e-65 251.5 212 59.0
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.0e-63 246.9 193 60.6
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.9e-62 242.7 309 46.6
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.4e-56 223.4 258 49.2
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.2e-52 211.1 134 74.6
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 5.2e-51 205.7 127 72.4
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 5.2e-51 205.7 127 72.4
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 5.2e-51 205.7 127 72.4
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 2.0e-50 203.8 190 56.8
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 8.3e-49 198.4 183 59.6
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.7e-47 193.4 159 59.1
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.1e-46 189.1 102 83.3
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 2.1e-44 183.7 163 60.1
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 4.7e-44 182.6 108 90.7
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-41 174.1 127 63.0
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.4e-40 170.2 134 61.2
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.9e-37 160.6 117 72.6
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.1e-35 154.8 163 52.8
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.2e-24 116.7 109 57.8
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.2e-24 116.7 109 57.8
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.3e-22 111.3 110 55.5
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.1e-22 109.4 109 55.0
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.5e-21 107.1 93 58.1
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 1.3e-20 104.8 154 39.0
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.2e-18 98.2 94 54.3
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 2.0e-18 97.4 72 66.7
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 5.8e-18 95.9 150 38.7
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.4e-10 70.1 51 70.6
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.5e-09 65.9 61 60.7
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 1.2e-07 61.6 58 50.0
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 3.5e-07 60.1 68 44.1


User provided reference genes

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