Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 3328.5 1704 100.0
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 3170.2 1706 95.8
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 3043.8 1710 91.7
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 3010.3 1709 90.8
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 3002.2 1700 90.9
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2724.9 1714 84.1
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2724.1 1714 84.0
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2718.3 1713 84.0
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 2704.5 1734 82.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2686.8 1730 82.1
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2481.8 1751 75.6
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2469.1 1769 75.4
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2214.1 1831 66.3
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2197.9 1844 65.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2189.8 1821 66.3
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2188.7 1759 68.1
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2187.5 1813 66.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2177.9 1835 65.3
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2172.9 1875 63.9
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2169.8 1831 65.1
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2169.0 1813 65.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2166.3 1843 64.6
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2164.4 1825 65.2
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2159.4 1813 65.4
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2157.5 1829 65.6
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2156.7 1825 65.2
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2155.6 1825 65.2
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2151.3 1830 65.0
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2148.2 1860 63.9
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2145.2 1816 64.9
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2144.8 1839 63.3
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2144.8 1857 63.9
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2140.2 1815 65.1
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2139.0 1815 65.1
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2134.4 1829 64.4
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2134.0 1828 64.1
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2131.3 1816 64.4
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2121.3 1809 64.8
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2117.4 1826 64.2
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 2115.9 1670 70.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2115.5 1810 64.3
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2114.3 1829 64.6
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2114.0 1805 64.4
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2103.2 1820 63.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2101.2 1839 63.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2096.6 1801 63.0
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2093.2 1810 62.6
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2092.4 1774 63.8
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2088.9 1810 62.2
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2085.5 1837 62.7
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2082.4 1892 61.4
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2081.2 1745 65.7
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2079.3 1820 62.5
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2078.5 1821 62.4
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2077.0 1816 62.4
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2076.6 1836 63.4
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2067.7 1822 61.9
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2066.6 1835 61.8
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2064.3 1882 60.8
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2062.7 1820 61.5
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2060.4 1843 62.9
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2060.4 1846 62.8
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2057.7 1846 62.0
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2053.9 1845 63.1
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2051.2 1796 62.9
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2050.8 1821 61.4
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2049.2 1813 62.1
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2048.9 1824 62.1
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2041.5 1800 62.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2038.5 1800 62.1
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2038.5 1798 62.8
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2033.1 1819 61.8
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2030.8 1762 62.5
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2029.6 1827 61.6
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2028.8 1796 62.8
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2026.1 1808 62.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2014.2 1796 61.7
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2013.8 1802 62.6
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2013.8 1816 61.5
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2013.8 1816 61.5
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2007.6 1822 62.0
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2001.5 1786 61.5
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1999.6 1742 62.6
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1987.2 1818 60.9
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1979.5 1744 62.8
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1975.3 1825 60.4
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1975.3 1760 61.7
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1973.7 1778 61.0
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 1959.9 1708 63.4
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1942.9 1733 62.3
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1934.8 1103 90.6
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1825.1 1695 60.5
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1811.2 1801 58.1
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1806.2 1739 58.3
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1796.2 1869 53.9
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1761.9 1827 54.9
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1722.2 1772 53.7
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1701.8 1757 52.9
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1560.8 1407 61.9
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1526.5 1344 63.2
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1520.4 1662 53.8
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1488.4 1716 51.9
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1360.1 1325 58.7
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1359.7 1327 57.2
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1352.4 1322 57.0
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1344.7 1508 54.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1325.8 1235 60.3
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1290.0 1977 42.2
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1282.7 1218 59.1
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1206.8 1759 43.9
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1182.5 1183 55.6
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1179.9 980 64.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1169.5 1908 39.6
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1144.8 1957 38.5
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1129.0 1914 39.0
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1127.1 1393 50.2
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 6.1e-303 1045.0 1145 54.1
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 5.1e-241 839.3 1302 42.4
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 9.6e-240 835.1 793 58.8
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 4.5e-221 773.1 1396 38.2
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.4e-206 724.2 617 60.5
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 1.8e-198 698.0 529 70.9
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.6e-197 694.1 472 76.9
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.2e-170 605.5 463 68.0
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 3.2e-166 590.9 601 54.4
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.3e-164 585.5 489 68.5
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 6.2e-162 576.6 374 78.3
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 5.8e-160 570.1 589 54.3
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 5.1e-156 557.0 349 77.9
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 3.0e-148 531.2 349 78.5
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.9e-147 528.5 431 59.4
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.3e-140 505.0 354 70.6
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.0e-132 478.0 385 66.8
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.4e-129 469.2 546 50.9
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.9e-116 424.5 330 64.2
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 6.1e-109 400.6 257 82.9
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 4.8e-106 391.0 469 52.0
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.6e-101 375.9 270 74.1
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 4.7e-85 321.2 396 48.0
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-75 289.3 388 46.9
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 1.0e-68 266.9 301 55.8
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.0e-68 266.9 300 56.0
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 2.8e-66 258.8 305 55.4
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 2.0e-48 199.5 123 79.7
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.4e-41 176.0 128 68.0
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 8.7e-23 114.4 70 82.9
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 3.6e-21 109.0 71 76.1
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.1e-20 105.9 90 61.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 5.8e-19 101.7 70 70.0
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 4.2e-17 95.5 592 22.3
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.3e-14 85.5 66 65.2
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 7.4e-14 84.7 68 61.8
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 2.1e-13 83.2 70 58.6
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 6.2e-13 81.6 70 58.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.8e-12 80.1 39 84.6
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.4e-12 79.7 34 97.1
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 2.0e-11 76.6 204 25.5
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.7e-10 73.6 169 34.3
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 2.3e-07 63.2 37 81.1
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.5e-06 60.5 199 26.1


User provided reference genes

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