Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.2e-214 749.6 394 100.0
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 2.2e-211 738.8 394 98.5
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 5.0e-208 727.6 394 96.7
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.0e-205 719.9 394 95.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.8e-202 709.1 396 94.7
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 3.2e-199 698.4 394 93.1
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 3.0e-197 691.8 394 91.9
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 5.2e-197 691.0 394 91.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 5.2e-197 691.0 394 91.9
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 5.2e-197 691.0 394 91.9
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.5e-196 689.5 399 91.5
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 8.0e-190 667.2 378 92.6
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-188 662.1 394 84.5
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.3e-187 659.8 394 86.3
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 1.5e-172 609.8 403 80.1
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 9.2e-162 573.9 394 77.4
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 3.3e-159 565.5 394 73.4
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.1e-158 562.8 393 73.5
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 6.2e-158 561.2 392 73.5
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 8.1e-158 560.8 392 73.2
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.1e-157 560.5 394 73.1
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 3.1e-157 558.9 392 74.0
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 6.9e-157 557.8 392 73.7
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.6e-156 555.8 392 72.7
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 8.4e-155 550.8 392 72.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.9e-154 549.7 392 71.4
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.4e-154 549.3 392 70.7
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.4e-154 548.1 394 71.8
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.2e-153 547.0 395 73.2
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.6e-153 546.6 392 72.2
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 2.1e-153 546.2 394 71.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 2.1e-153 546.2 393 72.5
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 4.6e-153 545.0 395 73.4
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 73.7
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.3e-152 543.5 394 72.3
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.3e-152 543.5 395 72.9
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 3.9e-152 542.0 392 71.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.6e-152 541.2 395 73.2
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.6e-152 541.2 395 73.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.1e-151 540.4 395 72.9
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.5e-151 540.0 395 72.9
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.5e-151 540.0 395 72.9
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.9e-151 539.7 397 72.0
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 4.3e-151 538.5 393 72.8
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 4.3e-151 538.5 411 69.6
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.6e-151 538.1 394 72.1
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 71.3
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 9.6e-151 537.3 395 72.7
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-150 537.0 395 72.4
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.3e-150 537.0 394 71.3
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.1e-150 536.2 394 71.1
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 2.8e-150 535.8 393 71.2
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 4.8e-150 535.0 396 71.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.8e-149 533.1 395 71.4
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 3.1e-149 532.3 393 69.7
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 4.0e-149 531.9 392 71.2
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 5.3e-149 531.6 394 69.8
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-148 529.6 381 76.6
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.0e-148 529.6 394 68.8
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 2.6e-148 529.3 394 68.8
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 3.4e-148 528.9 395 70.4
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 9.9e-148 527.3 394 69.3
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.3e-147 526.9 376 71.8
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 9.3e-146 520.8 392 68.6
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.1e-145 519.6 394 68.0
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.5e-143 513.5 402 69.4
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 3.3e-143 512.3 397 67.5
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 5.6e-143 511.5 392 65.6
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 5.6e-143 511.5 417 65.9
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 7.4e-143 511.1 396 68.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.4e-141 506.9 370 71.6
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 4.0e-141 505.4 438 63.0
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 9.0e-141 504.2 394 68.3
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.2e-140 503.8 370 71.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.1e-138 497.3 394 67.5
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 7.1e-138 494.6 397 67.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 9.3e-138 494.2 394 67.5
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 9.3e-138 494.2 397 67.0
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 9.3e-138 494.2 393 66.7
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.7e-137 492.7 394 66.8
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.5e-137 492.3 396 66.9
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.8e-136 490.0 394 67.0
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.0e-136 489.2 356 69.7
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.9e-135 486.5 394 65.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.3e-134 483.8 413 63.4
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.8e-133 479.9 394 65.2
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 7.6e-132 474.6 394 65.0
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.7e-131 473.4 394 65.2
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.5e-131 471.5 396 64.4
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 2.5e-130 469.5 398 63.3
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.1e-129 466.5 370 67.3
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 9.7e-127 457.6 394 62.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.5e-124 450.3 403 61.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 7.6e-124 448.0 426 58.5
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.3e-123 447.2 398 62.6
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.2e-118 429.9 246 91.1
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-117 427.6 395 62.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.0e-112 411.0 372 59.7
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 9.7e-111 404.4 392 54.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 2.4e-109 399.8 394 55.8
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.8e-102 376.3 395 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.0e-100 370.2 400 51.8
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 4.2e-98 362.5 393 53.4
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 9.4e-98 361.3 292 63.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 1.9e-90 337.0 285 64.6
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 5.5e-90 335.5 312 58.7
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 2.8e-78 296.6 330 54.2
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.2e-72 275.8 153 95.4
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 9.8e-71 271.6 303 53.5
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 9.8e-71 271.6 378 45.2
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 8.3e-70 268.5 389 46.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-62 243.8 165 78.2
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.5e-58 231.1 541 33.8
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 1.9e-58 230.7 295 47.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 7.3e-58 228.8 183 62.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 6.2e-57 225.7 170 65.9
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 8.1e-57 225.3 183 62.3
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 4.1e-53 213.0 418 32.8
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 2.5e-50 203.8 125 87.2
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.6e-49 201.1 138 77.5
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.1e-49 200.7 408 36.3
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.8e-48 197.6 395 34.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.2e-47 194.9 122 78.7
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 7.6e-47 192.2 150 70.7
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 6.9e-40 169.1 92 92.4
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.2e-39 168.3 146 64.4
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.5e-39 167.9 125 69.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.5e-39 167.9 207 49.3
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 7.6e-39 165.6 125 73.6
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.1e-37 161.8 116 75.0
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-30 137.1 178 54.5
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 2.1e-28 131.0 121 59.5
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.5e-26 124.8 91 69.2
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 3.3e-26 123.6 69 76.8
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.0e-24 116.7 148 43.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 9.0e-24 115.5 71 77.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.3e-19 101.7 76 71.1
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 5.1e-19 99.8 63 73.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 8.2e-17 92.4 81 64.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.0e-16 90.1 50 76.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.0e-14 85.5 57 73.7
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.9e-14 84.0 57 70.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.3e-11 75.1 44 81.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 4.1e-08 63.5 47 61.7
A04p04990 Brassica napus HOM05D004899 ORTHO05D006580 6.9e-08 62.8 43 69.8
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.2e-07 62.0 38 81.6
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 4.5e-07 60.1 35 80.0
BcaB08g35980 Brassica carinata HOM05D042867 ORTHO05D094468 1.3e-06 58.5 83 47.0
BcaB06g28621 Brassica carinata HOM05D002665 ORTHO05D002991 3.8e-06 57.0 30 83.3
BolC1t02169H Brassica oleracea HOM05D004899 ORTHO05D006580 3.8e-06 57.0 37 78.4
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.8e-06 57.0 60 51.7
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.8e-06 57.0 60 51.7
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.8e-06 57.0 60 51.7


User provided reference genes

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