Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.7e-119 432.6 206 100.0
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.3e-106 389.8 206 89.8
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.1e-92 343.6 207 79.7
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 3.1e-92 342.0 206 79.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.0e-92 341.7 206 78.2
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 7.6e-91 337.4 206 77.7
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.8e-90 335.1 204 79.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 9.3e-89 330.5 207 78.7
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-87 327.0 207 76.8
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.7e-87 324.3 207 75.8
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.9e-86 322.8 207 74.4
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.1e-85 319.3 207 74.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.1e-85 319.3 207 74.4
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 6.2e-85 317.8 207 73.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 6.2e-85 317.8 207 73.9
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.8e-84 316.2 206 76.2
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 2.0e-83 312.8 206 74.8
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 2.0e-83 312.8 206 74.8
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 2.0e-83 312.8 206 74.8
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 5.8e-83 311.2 204 75.0
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.3e-78 295.4 210 69.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 2.4e-76 289.3 206 68.4
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.9e-76 287.7 207 69.6
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 4.6e-72 275.0 208 63.0
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 7.9e-72 274.2 206 63.6
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.8e-71 273.1 197 65.0
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 3.0e-71 272.3 198 66.2
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-61 240.4 167 69.5
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.2e-61 237.7 210 54.8
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.1e-60 237.3 207 53.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.0e-58 228.4 208 52.9
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 6.5e-58 228.0 210 51.4
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.9e-57 226.5 208 51.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.5e-57 224.9 210 50.5
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 2.7e-56 222.6 212 49.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 7.9e-56 221.1 209 50.7
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.0e-55 219.2 209 51.7
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 8.8e-55 217.6 212 49.5
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.5e-54 216.9 207 50.2
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.6e-54 216.1 200 52.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.6e-54 216.1 213 48.8
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.7e-54 214.9 208 50.0
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 9.7e-54 214.2 212 50.0
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.3e-53 213.8 211 47.4
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.2e-53 213.0 220 50.9
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.7e-53 212.2 207 50.2
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.8e-53 211.8 211 46.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.1e-52 210.7 211 47.4
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.1e-52 208.8 213 49.3
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-52 208.8 210 48.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.1e-52 208.8 209 49.3
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 5.3e-52 208.4 214 47.7
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 5.3e-52 208.4 215 49.3
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 7.0e-52 208.0 217 48.8
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.0e-52 208.0 214 47.7
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 9.1e-52 207.6 212 48.6
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.2e-51 207.2 214 47.7
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.2e-51 207.2 213 49.8
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.6e-51 206.8 212 45.3
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.6e-51 206.8 207 50.7
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.0e-51 206.5 209 50.2
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.6e-51 206.1 212 46.2
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 3.5e-51 205.7 211 46.9
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.5e-51 205.7 207 51.2
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 4.5e-51 205.3 207 47.8
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 4.5e-51 205.3 210 48.6
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.9e-51 204.9 210 49.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 7.7e-51 204.5 210 48.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.0e-50 204.1 212 47.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.3e-50 203.8 211 51.2
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.3e-50 203.8 210 48.6
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.2e-50 203.0 210 48.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.5e-50 201.4 197 51.3
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.5e-50 201.4 208 48.6
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-49 200.3 212 47.6
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.5e-49 200.3 216 48.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.5e-49 199.5 211 50.7
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 2.5e-49 199.5 211 47.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.2e-49 198.7 210 48.6
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.4e-49 197.6 216 46.8
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 9.4e-49 197.6 209 49.3
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 9.4e-49 197.6 212 47.2
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.2e-48 197.2 202 50.0
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.6e-48 196.8 214 47.7
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.6e-48 196.8 207 48.8
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.6e-48 196.8 216 46.3
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.6e-48 196.8 210 47.1
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.6e-48 196.8 214 47.7
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 3.6e-48 195.7 212 47.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.7e-48 195.3 213 47.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 6.1e-48 194.9 212 47.6
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 6.1e-48 194.9 213 45.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 8.0e-48 194.5 211 46.9
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.0e-47 194.1 212 47.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 3.0e-47 192.6 213 46.0
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 3.0e-47 192.6 232 44.0
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.0e-47 192.6 194 49.5
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 5.2e-47 191.8 212 46.7
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 6.7e-47 191.4 214 45.3
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.5e-46 190.3 212 43.4
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 3.3e-46 189.1 193 48.2
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 4.4e-46 188.7 215 46.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 7.5e-46 188.0 207 46.4
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 7.5e-46 188.0 212 45.8
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.2e-45 186.4 194 47.9
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.3e-45 184.9 211 46.0
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 8.2e-45 184.5 213 44.1
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.1e-44 184.1 212 43.9
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 2.4e-44 183.0 191 49.7
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 3.1e-44 182.6 212 45.8
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 5.3e-44 181.8 200 47.5
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.3e-44 181.8 213 44.6
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 5.3e-44 181.8 208 45.2
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 7.0e-44 181.4 197 46.7
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.6e-43 180.3 198 47.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.7e-43 179.5 258 38.8
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.3e-42 177.2 196 46.4
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 2.2e-42 176.4 212 41.5
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.9e-42 176.0 207 45.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 6.5e-42 174.9 214 44.9
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 6.5e-42 174.9 215 43.7
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 8.5e-42 174.5 193 45.1
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.1e-41 174.1 213 44.6
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-41 173.3 210 44.8
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 4.2e-41 172.2 217 44.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.2e-41 172.2 199 45.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.2e-41 172.2 199 45.2
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-40 170.6 181 47.0
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.1e-40 169.9 217 43.8
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.6e-40 169.1 179 45.3
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-39 167.5 205 44.4
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.2e-39 165.2 190 45.8
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 5.2e-39 165.2 198 45.5
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 4.4e-38 162.2 179 46.4
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 5.7e-38 161.8 179 46.4
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 2.8e-37 159.5 206 44.7
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 6.3e-37 158.3 170 46.5
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.1e-36 157.5 179 44.1
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.8e-36 156.8 167 46.1
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.1e-36 156.0 163 48.5
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.1e-36 156.0 160 49.4
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.5e-35 152.5 237 39.2
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.7e-34 150.2 232 36.2
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 6.5e-34 148.3 234 37.6
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 6.5e-34 148.3 181 41.4
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 4.2e-33 145.6 223 36.3
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.6e-32 143.7 208 38.9
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.1e-32 143.3 150 44.7
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.1e-32 141.7 232 35.8
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.7e-29 132.5 179 41.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 4.1e-28 129.0 289 32.9
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 9.2e-28 127.9 220 37.7
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.6e-27 127.1 183 38.3
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.0e-27 126.7 138 46.4
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 3.5e-27 125.9 181 38.1
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 7.8e-27 124.8 233 34.3
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.8e-26 122.5 201 33.8
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.1e-25 120.9 161 40.4
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.5e-25 119.8 302 28.5
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 9.5e-25 117.9 94 56.4
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.8e-23 113.6 207 36.7
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.4e-20 104.0 207 32.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.2e-20 102.8 151 41.1
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-19 99.4 170 37.1
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 7.8e-19 98.2 88 53.4
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.5e-17 94.0 102 46.1
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.5e-17 93.2 72 58.3
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.7e-16 89.0 87 49.4
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.4e-15 87.4 74 52.7
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.4e-15 87.4 85 47.1
C02p42240 Brassica napus HOM05D003612 ORTHO05D018660 1.5e-14 84.0 78 55.1
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.8e-14 82.0 81 48.1
BcaC01g05568 Brassica carinata HOM05D003612 ORTHO05D018660 9.8e-14 81.3 78 53.8
C03p24820 Brassica napus HOM05D003612 ORTHO05D018660 9.8e-14 81.3 78 53.8
BolC2t07266H Brassica oleracea HOM05D003612 ORTHO05D018660 1.7e-13 80.5 65 61.5
BolC3t14871H Brassica oleracea HOM05D003612 ORTHO05D018660 6.4e-13 78.6 65 60.0
BcaC03g13974 Brassica carinata HOM05D003612 ORTHO05D018660 1.4e-12 77.4 75 53.3
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 9.2e-12 74.7 60 55.0
BcaC09g48296 Brassica carinata HOM05D003612 ORTHO05D018660 1.2e-11 74.3 62 59.7
BolC1t05129H Brassica oleracea HOM05D003612 ORTHO05D018660 2.0e-11 73.6 65 55.4
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-11 72.0 90 44.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.5e-09 67.4 118 36.4
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.3e-09 66.2 128 35.2
BcaB03g14131 Brassica carinata HOM05D003612 ORTHO05D004323 3.6e-08 62.8 53 52.8
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 8.1e-08 61.6 144 31.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 8.9e-07 58.2 67 46.3
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.0e-06 57.0 64 46.9


User provided reference genes

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