Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.4e-275 949.9 468 100.0
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.4e-265 918.3 468 95.5
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.8e-239 831.2 471 86.6
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.5e-222 776.2 476 81.7
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-212 740.7 475 79.4
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.0e-211 739.2 420 85.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 6.6e-207 724.2 385 89.6
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.6e-203 712.2 475 74.9
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.7e-200 702.2 477 73.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.3e-198 695.3 478 73.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 9.5e-198 693.7 476 76.5
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 9.5e-198 693.7 476 76.5
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 9.5e-198 693.7 476 76.5
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 4.7e-197 691.4 477 76.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-196 690.3 477 76.5
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.4e-195 685.3 444 76.4
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.4e-185 653.3 387 83.5
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 8.6e-183 644.0 474 67.9
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-182 642.5 474 67.7
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.8e-181 639.0 420 75.7
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-178 630.2 499 64.5
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-177 627.1 475 66.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 9.2e-177 624.0 475 66.5
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 9.2e-177 624.0 475 66.5
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.7e-175 619.8 390 77.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.9e-174 616.3 483 66.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-172 608.2 476 65.8
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 6.9e-172 607.8 475 66.1
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-171 607.1 391 75.4
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 9.6e-166 587.4 466 62.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.4e-164 583.6 468 62.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.0e-164 582.0 468 62.4
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-163 579.7 389 73.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.8e-163 578.2 491 60.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.8e-163 578.2 488 59.2
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.9e-162 575.9 488 60.5
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 2.9e-162 575.9 487 59.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 4.9e-162 575.1 488 60.0
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 8.4e-162 574.3 489 59.1
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.4e-161 573.5 489 58.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.4e-161 573.5 489 58.7
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.4e-161 573.5 490 58.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.1e-161 571.2 501 57.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 9.3e-161 570.9 479 59.7
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-160 570.5 487 58.9
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.6e-160 570.1 474 60.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.6e-160 570.1 490 58.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.6e-160 570.1 489 58.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.7e-160 569.3 465 61.3
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 7.9e-160 567.8 489 58.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-159 567.0 467 60.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.8e-159 566.6 473 61.3
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.8e-159 566.6 467 60.0
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.9e-158 563.1 489 58.1
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.7e-157 558.9 488 57.6
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.2e-157 558.1 488 57.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 4.0e-156 555.4 488 58.6
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.9e-156 554.7 499 56.7
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 9.0e-156 554.3 405 66.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.4e-155 552.4 474 59.5
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.2e-154 549.7 476 58.8
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.8e-154 548.9 476 58.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.5e-153 546.2 489 57.3
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.5e-153 546.2 490 58.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.1e-153 544.7 446 60.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.6e-152 543.5 490 56.9
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.7e-152 542.7 487 56.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 6.0e-152 541.6 462 58.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 6.0e-152 541.6 476 58.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.0e-151 540.8 458 59.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.8e-151 540.0 476 58.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.0e-151 539.3 458 58.7
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.0e-151 539.3 476 57.8
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.3e-150 535.8 496 56.7
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.6e-149 533.5 446 59.6
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.4e-148 530.4 484 54.1
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.1e-148 529.3 467 57.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.5e-147 526.9 399 64.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.6e-147 526.2 440 58.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.6e-147 526.2 398 63.3
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 4.5e-147 525.4 445 59.3
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 5.8e-147 525.0 487 55.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.8e-147 525.0 467 57.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.0e-146 524.2 482 55.8
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.2e-145 519.2 425 60.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.1e-144 516.5 466 57.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.7e-144 516.2 460 56.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.1e-144 515.0 312 80.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.3e-143 513.8 493 55.4
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.3e-143 513.8 445 58.4
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.9e-142 510.0 395 63.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 9.7e-142 507.7 439 58.5
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 6.3e-141 505.0 545 51.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.1e-140 502.7 386 63.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 4.5e-139 498.8 447 57.3
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.9e-139 498.4 436 56.7
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.2e-138 496.5 494 54.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.9e-137 493.4 460 56.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.2e-136 490.7 464 55.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.0e-135 487.6 448 55.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-134 484.2 496 52.0
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-134 483.8 417 58.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.5e-134 483.0 393 59.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 4.3e-134 482.3 438 56.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 9.7e-134 481.1 417 58.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.8e-133 478.8 416 58.4
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.8e-133 478.8 406 57.4
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 4.8e-133 478.8 487 50.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.3e-133 478.4 398 60.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 8.2e-133 478.0 483 53.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.1e-132 477.6 489 51.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.1e-132 477.6 484 50.4
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-132 476.9 400 59.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.8e-132 476.9 406 57.9
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 2.4e-132 476.5 484 50.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-131 473.4 417 58.0
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.6e-131 473.0 486 53.1
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 3.4e-131 472.6 719 39.6
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 4.5e-131 472.2 415 56.6
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.0e-130 471.1 413 58.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.8e-130 469.2 390 60.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.8e-130 469.2 456 52.2
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.6e-128 463.8 484 50.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 7.9e-128 461.5 428 55.8
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.0e-127 461.1 389 57.3
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.0e-127 461.1 480 50.6
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.0e-127 459.5 395 56.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.5e-126 457.2 399 56.6
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.6e-126 456.4 472 51.3
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 5.7e-126 455.3 483 51.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.7e-125 452.6 547 47.9
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.5e-123 447.2 475 50.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.0e-122 444.5 455 52.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.0e-122 444.5 425 53.6
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.7e-120 435.6 494 48.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 6.7e-119 431.8 363 60.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.5e-118 430.6 361 60.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.4e-118 429.1 599 41.6
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.4e-118 428.3 388 54.6
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.4e-116 423.3 364 57.4
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.7e-114 417.2 317 63.7
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.7e-112 409.8 388 52.1
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.0e-111 407.9 376 57.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.7e-109 400.6 394 51.3
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.7e-106 390.6 402 48.3
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.7e-104 382.5 375 52.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 3.3e-89 333.2 206 78.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.1e-76 289.7 218 63.3
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.6e-75 287.7 267 53.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 3.4e-70 270.0 248 56.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 4.3e-65 253.1 281 50.5
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.6e-64 251.1 276 49.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.4e-61 238.8 221 57.5
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.1e-59 234.2 310 42.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.1e-55 221.9 232 50.0
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-48 197.6 413 36.1
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.1e-47 193.7 211 51.2
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.4e-44 184.1 295 38.0
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.2e-44 183.7 465 30.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.3e-41 173.3 179 56.4
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.3e-34 151.0 259 39.0
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 9.0e-31 139.0 285 33.0
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.1e-25 122.1 121 56.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-25 122.1 92 60.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.4e-23 114.4 128 46.9
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 4.1e-23 113.6 117 48.7
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.7e-21 108.2 214 32.7
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.9e-18 97.1 97 54.6
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-15 89.0 101 50.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.7e-11 74.3 47 63.8
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.3e-10 71.2 359 26.2
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-06 57.8 45 60.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 2.6e-06 57.8 42 61.9


User provided reference genes

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