Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G42560 Arabidopsis thaliana HOM05D008991 ORTHO05D010442 3.6e-224 781.9 636 100.0
AL4G41110 Arabidopsis lyrata HOM05D008991 ORTHO05D010442 9.0e-175 617.8 702 79.1
Carub.0004s2501 Capsella rubella HOM05D008991 ORTHO05D010442 5.9e-142 508.8 661 77.3
Sp4g24690 Schrenkiella parvula HOM05D008991 ORTHO05D010442 3.5e-126 456.4 678 71.2
CARHR137700 Cardamine hirsuta HOM05D008991 ORTHO05D010442 1.3e-101 374.8 639 67.4
BcaB01g03456 Brassica carinata HOM05D008991 ORTHO05D010442 1.0e-93 348.6 661 42.1
C04p69790 Brassica napus HOM05D008991 ORTHO05D010442 5.6e-76 289.7 752 55.6
BcaC02g07231 Brassica carinata HOM05D008991 ORTHO05D010442 1.4e-71 275.0 792 53.5
Thhalv10017645m.g Eutrema salsugineum HOM05D008991 ORTHO05D010442 4.8e-59 233.4 239 71.1
BolC4t28480H Brassica oleracea HOM05D008991 ORTHO05D010442 1.4e-58 231.9 705 53.9
BcaB06g29254 Brassica carinata HOM05D008991 ORTHO05D010442 4.2e-55 220.3 797 51.4
BraA04t18682Z Brassica rapa HOM05D008991 ORTHO05D010442 4.6e-54 216.9 693 56.9
BcaNung03228 Brassica carinata HOM05D008991 ORTHO05D010442 1.4e-50 205.3 741 46.8
Aa31LG1G24360 Aethionema arabicum HOM05D008991 ORTHO05D010442 2.5e-44 184.5 718 47.6
A04p32280 Brassica napus HOM05D008991 ORTHO05D010442 5.1e-37 160.2 156 62.8
TWI59G0499 Tripterygium wilfordii HOM05D012920 ORTHO05D012188 1.6e-17 95.5 215 40.5
BcaNung05214 Brassica carinata HOM05D008991 ORTHO05D010442 2.5e-15 88.2 171 46.2
Cpa.g.sc209.19 Carica papaya HOM05D008991 ORTHO05D010442 2.5e-15 88.2 165 43.6
A03p23710 Brassica napus HOM05D022729 ORTHO05D010442 1.8e-13 82.0 145 42.8
Potri.013G118600 Populus trichocarpa HOM05D026498 ORTHO05D010442 1.8e-13 82.0 161 40.4
BraA03t11586Z Brassica rapa HOM05D022729 ORTHO05D010442 2.3e-13 81.6 145 42.8
Lsat_1_v5_gn_8_139801 Lactuca sativa HOM05D008991 ORTHO05D010442 3.0e-13 81.3 179 38.5
Ca_01464_v3 Cicer arietinum L. HOM05D012920 ORTHO05D012188 6.8e-13 80.1 217 34.6
Potri.019G090300 Populus trichocarpa HOM05D026498 ORTHO05D010442 6.8e-13 80.1 151 41.1
Cfa014713 Carpinus fangiana HOM05D008991 ORTHO05D010442 8.8e-13 79.7 200 35.0
Oeu036098.1 Olea europaea HOM05D008991 ORTHO05D010442 8.8e-13 79.7 191 36.6
Sabra19G0104000 Salix brachista HOM05D026498 ORTHO05D010442 8.8e-13 79.7 163 41.7
Actinidia30443 Actinidia chinensis HOM05D008991 ORTHO05D010442 1.5e-12 79.0 149 43.0
QL08p041343 Quercus lobata HOM05D008991 ORTHO05D010442 4.4e-12 77.4 214 35.0
Sopen07g027330 Solanum pennellii HOM05D011296 ORTHO05D013264 4.4e-12 77.4 157 41.4
BcaC01g05275 Brassica carinata HOM05D022729 ORTHO05D010442 7.5e-12 76.6 146 41.1
C03p28270 Brassica napus HOM05D022729 ORTHO05D010442 7.5e-12 76.6 146 41.1
BolC3t15200H Brassica oleracea HOM05D022729 ORTHO05D010442 7.5e-12 76.6 146 41.1
Ciclev10014817m.g Citrus clementina HOM05D008991 ORTHO05D010442 7.5e-12 76.6 210 34.8
Solyc07g053360.4 Solanum lycopersicum HOM05D011296 ORTHO05D013264 7.5e-12 76.6 198 35.4
Migut.H02156 Erythranthe guttata HOM05D008991 ORTHO05D010442 1.3e-11 75.9 151 41.7
Dinv15461 Davidia involucrata HOM05D008991 ORTHO05D010442 1.7e-11 75.5 146 41.8
Sabra19G0100600 Salix brachista HOM05D026498 ORTHO05D010442 1.7e-11 75.5 162 38.3
CiPaw.04G131500 Carya illinoinensis HOM05D008991 ORTHO05D010442 6.3e-11 73.6 172 37.8
PGR142G1329 Punica granatum HOM05D008991 ORTHO05D010442 8.3e-11 73.2 142 40.1
VMungo0251G0890 Vigna mungo HOM05D013591 ORTHO05D012188 1.1e-10 72.8 73 52.1
CAN.G1360.5 Capsicum annuum HOM05D011296 ORTHO05D013264 1.4e-10 72.4 201 36.3
Haze_13344 Corylus avellana HOM05D008991 ORTHO05D010442 1.4e-10 72.4 187 35.8
CANSAT64G0119 Cannabis sativa HOM05D008991 ORTHO05D010442 1.6e-09 68.9 188 38.3
MELO3C019755.2 Cucumis melo HOM05D024384 ORTHO05D010442 2.7e-09 68.2 205 32.2
Peaxi162Scf00469g00010 Petunia axillaris HOM05D011296 ORTHO05D010442 2.7e-09 68.2 223 32.3
Gohir.D11G064300 Gossypium hirsutum HOM05D020995 ORTHO05D010442 3.5e-09 67.8 239 28.9
Cc05_g08110 Coffea canephora HOM05D008991 ORTHO05D010442 4.5e-09 67.4 145 40.7
Psat5g275760 Pisum sativum HOM05D012920 ORTHO05D012188 5.9e-09 67.0 201 32.8
Gorai.007G069500 Gossypium raimondii HOM05D020995 ORTHO05D010442 7.7e-09 66.6 242 28.5
CsaV3_6G018720 Cucumis sativus L. HOM05D024384 ORTHO05D010442 1.0e-08 66.2 214 32.7
Hma1.2p1_0178F.1_g079010 Hydrangea macrophylla HOM05D011296 ORTHO05D013264 1.7e-08 65.5 174 37.4
CiPaw.03G186100 Carya illinoinensis HOM05D008991 ORTHO05D010442 2.3e-08 65.1 161 37.3
Sc21g0003130 Simmondsia chinensis HOM05D011296 ORTHO05D013264 3.8e-08 64.3 321 28.0
COL.COLO4_36295 Corchorus olitorius HOM05D020995 ORTHO05D010442 5.0e-08 63.9 180 35.0
Psat5g276240 Pisum sativum HOM05D012920 ORTHO05D012188 5.0e-08 63.9 90 43.3
Sed0024903 Sechium edule HOM05D024384 ORTHO05D010442 1.1e-07 62.8 203 32.0
Lj3g0021605 Lotus japonicus HOM05D012920 ORTHO05D012188 7.2e-07 60.1 78 42.3
Manes.13G139000 Manihot esculenta HOM05D012920 ORTHO05D012188 7.2e-07 60.1 224 28.6
Phvul.011G135600 Phaseolus vulgaris HOM05D012920 ORTHO05D012188 4.7e-06 57.4 148 34.5


User provided reference genes

Program Settings