Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 1.1e-61 240.0 142 100.0
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.5e-53 213.0 142 93.0
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.7e-41 172.9 112 83.0
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 2.2e-41 172.6 109 80.7
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-40 169.5 109 80.7
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 1.9e-40 169.5 109 80.7
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 5.5e-40 167.9 114 79.8
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.2e-39 166.8 111 79.3
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.2e-39 166.8 111 79.3
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-39 166.0 111 79.3
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 2.7e-39 165.6 109 79.8
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 3.6e-39 165.2 109 80.7
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 3.0e-38 162.2 108 77.8
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 3.9e-38 161.8 109 78.9
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 3.9e-38 161.8 109 78.9
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.8e-36 154.8 114 78.1
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 8.8e-30 134.0 97 72.2
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.4e-27 126.7 122 58.2
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.6e-26 123.2 121 57.9
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 4.5e-26 121.7 118 58.5
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.3e-25 120.2 122 57.4
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 5.0e-25 118.2 119 57.1
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-24 116.3 116 56.9
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 9.4e-24 114.0 119 55.5
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 9.4e-24 114.0 119 55.5
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 9.4e-24 114.0 119 55.5
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 9.4e-24 114.0 119 55.5
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 2.1e-23 112.8 124 55.6
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 4.7e-23 111.7 120 55.0
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 6.1e-23 111.3 122 54.9
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.0e-23 110.9 119 55.5
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.0e-22 110.5 117 56.4
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.0e-22 109.0 119 52.9
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 5.2e-22 108.2 127 54.3
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 6.8e-22 107.8 120 54.2
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 6.8e-22 107.8 120 54.2
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.2e-21 107.1 127 55.1
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.6e-21 105.9 118 54.2
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-21 105.9 120 54.2
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 2.8e-20 102.4 123 53.7
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 8.3e-20 100.9 115 53.9
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 1.4e-19 100.1 116 51.7
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 5.4e-19 98.2 124 49.2
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 4.5e-18 95.1 102 56.9
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-14 84.0 96 52.1
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 5.9e-10 68.2 39 82.1
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 5.9e-10 68.2 39 82.1
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.8e-09 65.5 48 66.7
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.5e-08 63.5 76 48.7
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.5e-08 62.8 112 38.4
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 4.3e-08 62.0 44 68.2
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 4.3e-08 62.0 46 65.2
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 4.3e-08 62.0 48 68.8
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 5.6e-08 61.6 47 70.2
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 5.6e-08 61.6 47 70.2
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 9.5e-08 60.8 41 70.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 9.5e-08 60.8 119 35.3
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-07 60.5 44 68.2
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.2e-07 60.5 44 68.2
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.6e-07 60.1 119 38.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.6e-07 60.1 60 55.0
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 2.8e-07 59.3 107 39.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 2.8e-07 59.3 40 70.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 2.8e-07 59.3 66 54.5
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-07 59.3 66 54.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 2.8e-07 59.3 45 64.4
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.8e-07 59.3 56 55.4
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.6e-07 58.9 113 36.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 3.6e-07 58.9 121 39.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 3.6e-07 58.9 86 45.3
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.6e-07 58.9 110 36.4
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.7e-07 58.5 66 53.0
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 8.0e-07 57.8 46 65.2
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 8.0e-07 57.8 53 56.6
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.0e-06 57.4 61 50.8
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.8e-06 56.6 132 34.1
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.8e-06 56.6 48 60.4
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.8e-06 56.6 34 73.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.3e-06 56.2 47 61.7
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.3e-06 56.2 66 53.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 44 68.2
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.0e-06 55.5 129 33.3
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 43 62.8
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 4.0e-06 55.5 48 60.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 5.2e-06 55.1 44 63.6
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 136 33.8
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 44 63.6
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.9e-06 54.3 48 60.4
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 8.9e-06 54.3 43 62.8


User provided reference genes

Program Settings