Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.1e-110 404.1 356 100.0
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 3.4e-107 392.5 354 98.0
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.0e-106 391.0 190 98.9
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.7e-106 390.2 190 98.9
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 1.4e-105 387.1 190 97.9
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.5e-105 386.3 190 97.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.5e-105 386.3 190 97.4
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.5e-105 386.3 190 97.4
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 2.5e-105 386.3 190 97.4
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 3.2e-105 386.0 190 97.4
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 3.3e-102 375.9 190 94.7
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 5.7e-102 375.2 190 94.2
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 2.2e-101 373.2 213 86.9
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.8e-100 370.2 190 92.6
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 7.0e-100 368.2 197 90.9
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 9.1e-100 367.9 190 90.5
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.0e-98 364.4 190 88.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 6.5e-98 361.7 190 87.4
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 6.5e-98 361.7 190 87.4
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 8.5e-98 361.3 190 89.5
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 2.5e-97 359.8 190 88.4
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 4.2e-97 359.0 190 87.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 4.2e-97 359.0 190 87.9
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 5.5e-97 358.6 190 87.9
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 5.5e-97 358.6 190 87.9
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 9.4e-97 357.8 211 83.4
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 9.4e-97 357.8 190 85.8
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.2e-96 357.5 190 86.8
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.2e-96 357.5 190 88.4
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.2e-96 357.5 190 86.8
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.6e-96 357.1 218 81.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.6e-96 357.1 190 86.8
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.6e-96 357.1 190 86.8
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 2.1e-96 356.7 190 85.3
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.1e-96 356.7 190 85.3
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 4.7e-96 355.5 190 86.3
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.7e-96 355.5 190 84.7
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 4.7e-96 355.5 190 85.8
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 8.0e-96 354.8 190 86.8
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.0e-95 354.4 190 90.0
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.0e-95 354.4 190 85.8
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.0e-95 354.4 190 85.8
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.8e-95 353.6 190 84.2
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 2.3e-95 353.2 190 85.3
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.3e-95 353.2 190 84.2
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 3.0e-95 352.8 190 85.3
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 3.0e-95 352.8 190 84.2
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 3.0e-95 352.8 190 86.8
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 4.0e-95 352.4 190 85.3
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 4.0e-95 352.4 190 86.8
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 4.0e-95 352.4 190 86.3
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 4.0e-95 352.4 190 85.3
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 4.0e-95 352.4 190 85.8
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 5.2e-95 352.1 189 86.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 5.2e-95 352.1 190 84.2
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 6.7e-95 351.7 190 85.3
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 8.8e-95 351.3 189 84.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 8.8e-95 351.3 190 85.3
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.1e-94 350.9 190 83.7
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.1e-94 350.9 190 85.8
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.1e-94 350.9 189 84.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 2.0e-94 350.1 190 85.3
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 2.6e-94 349.7 190 84.2
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 3.3e-94 349.4 190 85.8
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 4.4e-94 349.0 189 84.7
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 5.7e-94 348.6 190 83.2
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 5.7e-94 348.6 190 83.2
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 5.7e-94 348.6 190 83.2
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 5.7e-94 348.6 190 85.8
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 5.7e-94 348.6 190 85.8
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.5e-94 348.2 189 84.7
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.5e-94 348.2 189 84.7
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 7.5e-94 348.2 190 85.3
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 7.5e-94 348.2 189 85.2
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 9.7e-94 347.8 189 84.7
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 9.7e-94 347.8 190 84.2
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 9.7e-94 347.8 190 84.2
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 9.7e-94 347.8 190 84.2
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 9.7e-94 347.8 188 83.5
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.3e-93 347.4 190 84.7
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.3e-93 347.4 204 80.4
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.7e-93 347.1 190 84.2
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.7e-93 347.1 188 84.6
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.2e-93 346.7 190 84.2
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 2.8e-93 346.3 190 84.2
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.7e-93 345.9 190 83.2
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.7e-93 345.9 190 83.2
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 3.7e-93 345.9 189 85.2
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 6.3e-93 345.1 190 84.2
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-92 344.4 208 78.4
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 2.4e-92 343.2 190 83.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.1e-92 342.8 190 83.2
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 5.3e-92 342.0 190 83.2
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 5.3e-92 342.0 190 83.7
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 7.0e-92 341.7 190 82.6
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.6e-91 340.5 189 82.0
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 2.0e-91 340.1 190 82.6
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 5.9e-91 338.6 189 81.0
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 4.2e-89 332.4 239 69.0
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 7.2e-89 331.6 190 81.1
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.0e-87 327.8 190 82.6
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 4.0e-87 325.9 190 78.4
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.2e-86 324.3 242 66.5
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.0e-86 323.6 190 78.9
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 5.4e-84 315.5 190 77.4
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 9.1e-84 314.7 189 76.7
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.2e-83 314.3 208 74.5
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.0e-83 313.5 190 76.8
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.7e-82 310.5 167 85.6
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.9e-82 309.7 266 59.4
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 5.5e-81 305.4 167 82.6
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 8.0e-80 301.6 200 72.0
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-79 300.8 190 73.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 5.2e-79 298.9 184 76.1
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.4e-76 290.8 155 84.5
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 9.5e-73 278.1 190 72.6
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 6.8e-71 271.9 190 64.2
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 9.5e-65 251.5 186 66.7
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 2.5e-57 226.9 185 57.3
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 9.2e-52 208.4 184 53.3
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.1e-51 207.2 192 54.2
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.8e-47 194.1 139 69.1
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 2.7e-43 180.3 97 82.5
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.1e-39 166.8 94 79.8
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 4.0e-39 166.4 93 81.7
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 4.4e-38 162.9 95 78.9
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.8e-24 117.1 130 52.3
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 7.6e-22 109.0 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 7.6e-22 109.0 70 71.4
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 1.1e-17 95.1 53 81.1
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 2.4e-15 87.4 60 70.0
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.2e-13 80.9 69 62.3
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 6.5e-13 79.3 53 62.3
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.9e-09 67.8 42 71.4
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 1.1e-07 62.0 118 38.1
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 9.0e-07 58.9 29 89.7


User provided reference genes

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