Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 4.6e-269 930.6 464 100.0
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.0e-260 901.4 464 96.6
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 5.3e-257 890.6 464 95.5
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.5e-251 871.7 464 94.2
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.8e-249 865.5 463 92.4
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.2e-248 862.8 462 92.4
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 6.0e-245 850.5 464 89.7
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.8e-244 849.0 464 90.1
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 3.7e-242 841.3 464 89.4
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 6.9e-241 837.0 464 89.0
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.7e-239 832.4 465 88.8
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 3.8e-239 831.2 468 87.8
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.3e-235 817.8 439 90.2
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 1.2e-208 729.9 459 77.1
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.5e-208 729.6 457 76.6
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.5e-208 729.6 457 76.6
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.9e-207 725.3 462 75.5
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.8e-207 724.9 457 76.1
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.0e-207 724.5 458 77.1
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 5.0e-207 724.5 458 75.3
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.1e-206 723.4 457 75.9
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.9e-206 722.6 457 77.0
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 4.2e-206 721.5 460 75.4
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 7.2e-206 720.7 457 75.7
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.1e-205 717.6 458 74.7
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 6.1e-205 717.6 457 75.3
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.8e-204 716.1 457 75.7
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.8e-204 716.1 452 76.1
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.3e-204 715.7 460 75.4
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 5.7e-203 711.1 457 76.4
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 5.7e-203 711.1 457 74.2
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 9.7e-203 710.3 423 79.4
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 9.7e-203 710.3 459 74.5
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.7e-202 709.5 487 71.0
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.8e-202 708.0 460 74.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 6.3e-202 707.6 466 75.3
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 6.3e-202 707.6 455 74.3
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 3.1e-201 705.3 464 73.7
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 5.3e-201 704.5 457 74.6
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 5.3e-201 704.5 453 74.2
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 7.0e-201 704.1 452 74.1
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.6e-200 703.0 455 75.2
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.6e-200 703.0 455 75.2
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 3.5e-200 701.8 459 72.8
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 4.5e-200 701.4 459 72.5
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 7.7e-200 700.7 459 73.9
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 1.3e-199 699.9 454 74.4
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.3e-199 699.9 458 74.0
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.2e-199 699.1 457 74.0
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.2e-199 699.1 459 73.2
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.1e-198 696.8 502 67.7
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 5.5e-198 694.5 422 78.4
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 9.4e-198 693.7 455 73.4
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.2e-197 693.3 454 72.7
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 4.7e-197 691.4 456 73.2
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 6.1e-197 691.0 479 71.2
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 8.0e-197 690.6 480 70.6
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 8.0e-197 690.6 457 73.1
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 8.0e-197 690.6 450 72.7
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.0e-196 690.3 457 71.8
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.4e-196 689.9 454 72.5
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.8e-196 689.5 491 69.7
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.0e-196 688.7 454 72.2
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 6.8e-196 687.6 452 72.6
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 8.8e-196 687.2 448 73.4
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 8.8e-196 687.2 443 74.0
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 2.0e-195 686.0 472 71.8
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 7.5e-195 684.1 448 72.8
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 9.8e-195 683.7 485 69.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.3e-194 683.3 477 69.8
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.7e-194 682.9 448 72.8
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.7e-194 681.8 457 72.4
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 6.3e-194 681.0 458 71.0
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 6.3e-194 681.0 461 69.8
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.3e-194 681.0 452 72.3
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.4e-193 679.9 459 72.1
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.1e-193 678.3 460 70.9
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 5.4e-193 677.9 454 71.6
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 1.0e-191 673.7 457 68.7
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.3e-191 673.3 466 70.2
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.1e-190 670.2 455 69.9
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.1e-190 670.2 598 58.7
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.9e-190 669.5 456 71.1
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 4.2e-190 668.3 459 68.2
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.0e-188 663.7 454 71.1
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.0e-188 663.7 479 66.2
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 3.0e-188 662.1 446 71.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 2.6e-187 659.1 503 65.4
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.2e-186 656.0 453 70.9
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 4.1e-185 651.7 538 61.2
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 4.5e-184 648.3 462 69.0
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.7e-183 646.4 461 67.5
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.3e-183 646.0 452 69.5
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.2e-181 640.2 446 69.3
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.4e-180 636.7 426 70.4
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.4e-180 636.7 459 67.1
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.6e-168 596.7 382 74.6
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 3.1e-164 582.4 357 76.5
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.9e-164 580.9 372 74.2
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.2e-162 576.2 453 60.3
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.1e-161 573.9 381 70.6
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.1e-161 571.2 358 76.3
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 9.2e-161 570.9 378 77.8
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 7.3e-158 561.2 447 63.1
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 4.4e-155 552.0 292 92.5
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 5.6e-150 535.0 451 59.6
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 7.3e-150 534.6 434 60.8
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 5.8e-147 525.0 451 57.9
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 7.1e-145 518.1 398 65.6
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.5e-142 509.6 446 59.2
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 9.6e-142 507.7 476 55.5
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 5.8e-139 498.4 444 57.9
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 2.5e-121 439.9 281 74.4
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 7.9e-120 434.9 455 52.5
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.9e-118 430.3 271 73.4
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.4e-105 387.5 518 43.6
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 5.1e-103 379.0 253 68.4
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 4.8e-101 372.5 254 71.7
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.2e-96 357.8 424 46.9
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.1e-94 351.3 535 40.9
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.7e-94 349.0 252 70.2
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 7.7e-91 338.6 242 74.4
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 5.3e-84 315.8 455 39.1
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.9e-81 307.4 195 83.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 9.4e-81 305.1 256 62.5
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.7e-80 302.8 245 64.5
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 9.5e-73 278.5 242 64.9
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 4.3e-65 253.1 162 73.5
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.3e-65 253.1 177 71.2
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.1e-60 236.5 184 62.5
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 9.2e-60 235.3 151 72.2
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.2e-53 214.2 139 75.5
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 6.8e-47 192.6 112 86.6
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.5e-41 174.1 125 70.4
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 3.3e-41 173.7 158 54.4
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.8e-39 166.0 117 68.4
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 9.9e-38 162.2 103 79.6
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 8.4e-37 159.1 108 73.1
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 1.7e-34 151.4 107 72.0
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.1e-32 144.4 339 31.0
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 5.2e-31 139.8 98 68.4
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 5.8e-30 136.3 91 72.5
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.8e-29 133.7 91 67.0
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 5.6e-25 119.8 71 90.1
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 5.6e-25 119.8 71 90.1
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 5.6e-25 119.8 71 90.1
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 7.1e-20 102.8 103 53.4
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 7.4e-17 92.8 66 63.6
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.2e-16 89.7 97 47.4
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 2.4e-15 87.8 68 60.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.0e-14 84.7 428 26.4
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 3.4e-14 84.0 44 88.6
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 6.0e-11 73.2 65 56.9
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 2.3e-10 71.2 401 26.4
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 2.3e-10 71.2 43 76.7
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 5.1e-10 70.1 147 37.4
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.5e-09 68.6 37 89.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.9e-09 68.2 56 60.7
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 4.3e-09 67.0 37 86.5
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 9.6e-09 65.9 42 69.0
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.7e-08 63.9 51 60.8
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.1e-07 62.4 38 71.1
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 6.9e-07 59.7 311 24.1
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 9.0e-07 59.3 137 34.3
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 9.0e-07 59.3 184 32.6
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 3.4e-06 57.4 202 29.7


User provided reference genes

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