Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 0.0e+00 1103.6 574 100.0
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.0e-222 775.0 602 73.8
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 4.0e-214 748.4 610 71.5
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.8e-186 654.4 624 62.2
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.3e-185 652.9 565 68.8
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.3e-183 647.1 627 61.7
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 7.6e-181 637.9 600 62.2
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 3.5e-178 629.0 577 64.1
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 9.6e-176 620.9 611 61.4
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.8e-174 616.7 616 59.9
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.4e-172 607.8 622 59.6
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.4e-171 607.1 623 58.4
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.4e-171 607.1 566 63.3
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.9e-171 606.7 615 59.7
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 2.7e-170 602.8 614 58.5
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.8e-169 600.1 612 58.5
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 3.0e-161 572.8 615 56.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 8.7e-161 571.2 626 57.3
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 6.9e-158 561.6 603 57.2
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 1.5e-157 560.5 607 57.0
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.5e-157 560.5 614 57.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 2.6e-157 559.7 607 56.8
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 1.7e-156 557.0 614 56.8
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-153 547.4 619 54.9
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.2e-149 534.3 629 52.0
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 3.4e-149 532.7 647 51.9
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 8.8e-137 491.5 627 51.5
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 3.7e-135 486.1 599 51.6
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-134 483.4 624 51.1
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 4.2e-131 472.6 630 47.3
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 7.5e-128 461.8 621 47.0
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 9.1e-126 454.9 643 45.7
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.6e-125 454.1 425 64.0
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 3.2e-123 446.4 624 49.4
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 4.2e-123 446.0 632 44.8
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 5.5e-123 445.7 563 50.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 1.8e-121 440.7 637 45.4
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 5.2e-121 439.1 637 45.2
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 6.8e-121 438.7 636 44.7
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.2e-120 438.0 636 44.7
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 1.5e-120 437.6 637 45.1
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 1.3e-119 434.5 634 43.7
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.8e-119 433.3 640 45.2
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.8e-119 432.6 630 45.2
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 6.3e-119 432.2 634 43.7
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 3.1e-118 429.9 635 44.1
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 9.1e-118 428.3 639 44.3
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.6e-117 427.6 621 44.3
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.6e-117 427.6 635 43.5
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 4.5e-117 426.0 629 45.6
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 4.5e-117 426.0 621 44.1
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 5.9e-117 425.6 640 44.2
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.0e-116 424.9 634 43.4
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.5e-116 422.2 629 45.6
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 2.1e-114 417.2 622 43.1
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 2.8e-114 416.8 630 44.0
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 4.7e-114 416.0 632 43.8
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.0e-113 414.8 616 44.3
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.0e-113 414.8 626 42.5
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 1.8e-113 414.1 622 42.6
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.0e-113 412.9 651 43.3
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.2e-112 411.4 596 46.1
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 3.4e-112 409.8 640 42.7
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 7.5e-112 408.7 637 42.7
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 4.9e-111 406.0 634 43.2
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 1.1e-110 404.8 611 44.2
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-110 402.9 623 44.0
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 5.4e-110 402.5 610 43.1
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 7.0e-110 402.1 656 41.9
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 9.2e-110 401.7 619 44.3
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.1e-107 394.8 631 44.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.5e-107 394.4 697 38.5
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.5e-107 394.4 534 44.8
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.9e-107 394.0 604 41.7
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 3.3e-107 393.3 732 36.9
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 9.5e-107 391.7 726 37.1
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 9.5e-107 391.7 623 43.3
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.2e-106 391.3 632 41.9
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.6e-106 391.0 639 41.3
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.0e-105 388.3 719 37.1
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.4e-105 387.9 637 41.4
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.3e-105 387.1 640 44.1
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 2.6e-104 383.6 528 44.1
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 7.5e-104 382.1 645 39.5
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-103 381.3 700 37.0
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.3e-103 381.3 633 40.6
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.7e-103 380.9 615 42.8
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.7e-103 379.8 536 44.2
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 6.4e-103 379.0 595 45.5
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.1e-102 378.3 646 39.0
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.4e-102 377.9 623 41.9
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.8e-102 377.5 618 42.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 3.2e-102 376.7 577 41.6
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.6e-101 374.4 636 41.2
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 2.0e-101 374.0 631 41.7
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.3e-100 371.3 627 40.0
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.3e-100 371.3 623 40.3
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.0e-100 369.4 651 41.0
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 8.6e-100 368.6 613 39.8
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 8.6e-100 368.6 638 39.0
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.9e-99 367.5 622 41.8
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.3e-99 366.7 623 40.4
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.3e-99 366.7 602 40.9
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 3.3e-99 366.7 629 40.2
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 4.3e-99 366.3 659 40.7
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 9.5e-99 365.2 458 50.4
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.6e-98 364.4 621 40.7
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 2.1e-98 364.0 643 39.5
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.8e-98 363.6 650 40.8
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 3.6e-98 363.2 619 41.2
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.2e-98 362.5 572 43.0
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.4e-97 361.3 607 41.2
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.3e-97 360.5 655 38.9
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.0e-97 359.8 642 38.0
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.4e-96 356.3 587 41.9
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.4e-96 356.3 587 41.9
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 7.5e-96 355.5 696 36.6
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.7e-95 354.4 610 40.0
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 4.1e-94 349.7 616 40.7
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 9.2e-94 348.6 524 44.7
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.5e-93 346.7 520 42.9
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.0e-92 342.8 645 38.6
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 7.3e-91 339.0 645 38.6
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 7.3e-91 339.0 595 39.0
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.2e-90 338.2 608 39.3
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.2e-90 338.2 645 38.4
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.1e-90 337.4 552 41.5
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 2.8e-90 337.0 640 38.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 3.6e-90 336.7 638 38.2
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.1e-89 335.1 452 47.1
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.3e-89 334.0 619 38.9
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.2e-89 332.8 656 38.3
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.0e-88 330.9 664 37.5
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.7e-87 327.8 619 39.6
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 2.8e-82 310.5 596 38.4
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.8e-82 310.5 618 38.3
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 4.0e-81 306.6 547 39.3
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 8.4e-79 298.9 324 56.8
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.1e-77 294.3 598 37.0
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 3.5e-77 293.5 643 33.9
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 6.6e-76 289.3 248 67.7
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 6.6e-68 262.7 243 64.2
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 6.4e-63 246.1 621 30.9
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 7.4e-59 232.6 584 32.2
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 6.2e-58 229.6 632 30.7
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 6.2e-58 229.6 632 30.7
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.5e-56 224.9 293 47.1
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 4.5e-56 223.4 632 31.3
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 2.9e-55 220.7 428 37.6
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 9.6e-51 205.7 375 37.6
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 1.0e-47 195.7 253 47.0
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.6e-45 188.3 329 39.8
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 2.7e-45 187.6 202 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 1.8e-44 184.9 566 30.0
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.2e-42 176.0 379 34.6
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.1e-41 173.7 342 38.0
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.5e-40 170.2 259 40.9
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 2.4e-33 147.9 360 34.7
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.3e-31 142.1 622 26.0
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 9.4e-30 136.0 263 38.4
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 3.9e-28 130.6 194 43.8
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 4.5e-24 117.1 75 66.7
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 5.9e-24 116.7 300 32.0
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.2e-22 110.9 167 44.9
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 5.5e-22 110.2 287 31.7
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.0e-20 104.4 175 38.9
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 3.3e-19 100.9 192 35.9
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.3e-18 99.0 302 30.8
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 3.7e-18 97.4 78 56.4
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 8.2e-18 96.3 151 43.7
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-17 94.0 188 34.6
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 2.5e-14 84.7 211 34.1
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 2.6e-11 74.7 105 41.9
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.3e-10 72.4 161 34.2
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.3e-09 67.0 128 35.9
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 1.7e-07 62.0 296 24.3
Aa31sc1240G10 Aethionema arabicum HOM05D003539 ORTHO05D004111 5.0e-07 60.5 47 63.8


User provided reference genes

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