Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 5.5e-215 751.9 627 100.0
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.1e-135 488.4 630 73.5
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.1e-135 488.4 630 73.5
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.5e-124 451.4 493 75.9
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 7.1e-114 416.0 627 75.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.4e-101 375.2 633 71.7
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 7.4e-87 326.2 611 64.5
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 6.3e-86 323.2 632 60.4
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.6e-84 317.8 609 62.1
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.3e-78 298.9 629 53.3
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 5.3e-77 293.5 629 48.6
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 1.2e-76 292.4 629 53.1
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.4e-74 285.4 342 54.1
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 6.7e-72 276.6 628 57.6
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.8e-70 271.2 628 58.4
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.8e-61 241.9 632 57.6
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 8.8e-56 223.0 486 52.9
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 4.8e-54 217.2 626 54.2
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 4.8e-54 217.2 253 47.4
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 4.5e-52 210.7 256 46.1
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 5.9e-52 210.3 344 37.2
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 7.2e-42 176.8 303 36.6
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 5.7e-39 167.2 360 33.1
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.4e-37 162.5 226 42.0
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 4.1e-37 161.0 257 36.2
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 2.0e-36 158.7 330 39.7
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 2.3e-35 155.2 329 32.8
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 6.6e-35 153.7 313 33.2
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.1e-34 152.9 306 33.3
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.8e-32 145.6 256 33.6
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 7.5e-31 140.2 310 32.9
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 2.9e-30 138.3 237 36.7
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 3.7e-30 137.9 294 33.0
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 3.5e-28 131.3 180 40.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.7e-27 129.0 179 38.0
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.6e-27 126.7 242 34.3
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 2.5e-26 125.2 200 40.0
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.3e-26 124.8 217 36.4
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 5.6e-26 124.0 184 41.3
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.6e-25 122.5 185 34.6
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 1.6e-25 122.5 129 45.7
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.7e-25 120.9 304 29.6
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-24 119.4 326 27.9
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 2.3e-24 118.6 205 35.6
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 4.0e-24 117.9 272 30.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 5.2e-24 117.5 171 39.8
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.2e-23 116.3 127 45.7
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.2e-23 116.3 309 35.0
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.0e-23 115.5 206 35.0
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.6e-23 115.2 174 39.7
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 3.4e-23 114.8 216 33.3
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.7e-22 112.5 197 33.0
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 6.4e-22 110.5 192 35.9
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 8.3e-22 110.2 132 45.5
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.2e-21 108.2 236 33.5
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 5.4e-21 107.5 172 36.6
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 7.0e-21 107.1 207 33.8
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.2e-21 106.7 216 31.9
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 9.2e-21 106.7 219 33.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.6e-20 105.9 146 42.5
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.1e-20 105.5 211 31.8
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 3.5e-20 104.8 134 41.0
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.0e-19 103.2 196 33.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.0e-19 103.2 170 34.1
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.3e-19 102.1 259 30.9
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.0e-19 101.7 193 35.8
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 3.0e-19 101.7 198 31.8
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 3.9e-19 101.3 199 31.7
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.1e-18 99.8 295 31.5
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.5e-18 98.6 134 38.1
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.2e-17 96.3 195 36.4
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.1e-17 95.5 118 45.8
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 4.7e-17 94.4 188 33.0
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 6.2e-17 94.0 194 34.5
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.4e-16 92.8 201 35.8
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.3e-16 92.0 309 27.5
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.3e-16 92.0 216 31.0
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 4.0e-16 91.3 128 40.6
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 4.0e-16 91.3 328 31.1
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 6.8e-16 90.5 178 35.4
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 8.9e-16 90.1 122 37.7
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 1.5e-15 89.4 135 34.8
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 2.0e-15 89.0 199 29.6
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 9.9e-15 86.7 177 33.3
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.9e-14 85.1 184 33.7
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 8.3e-14 83.6 299 32.4
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.9e-13 82.4 155 34.8
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.4e-13 82.0 208 28.4
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 5.4e-13 80.9 126 37.3
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 7.1e-13 80.5 160 30.6
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 7.1e-13 80.5 129 36.4
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.2e-13 80.1 257 23.7
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.1e-12 79.0 105 39.0
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 2.1e-12 79.0 287 27.2
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.1e-12 79.0 112 34.8
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 7.8e-12 77.0 163 35.0
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 7.8e-12 77.0 163 35.0
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.3e-11 76.3 191 29.3
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 5.1e-11 74.3 142 30.3
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 6.6e-11 73.9 143 31.5
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.5e-10 72.8 133 33.1
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 3.3e-10 71.6 173 28.9
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 3.3e-10 71.6 202 29.7
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 2.1e-09 68.9 93 44.1
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 2.8e-09 68.6 132 34.1
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 6.8e-08 63.9 189 24.9
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.9e-08 63.5 224 24.6
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 1.5e-07 62.8 113 36.3
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.0e-07 62.4 108 38.0
MBI05_g20726_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 1.3e-06 59.7 155 28.4
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 3.8e-06 58.2 156 28.2
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 6.4e-06 57.4 202 36.6


User provided reference genes

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