Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.0e-224 783.9 1334 100.0
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 6.5e-191 672.5 1335 87.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.0e-148 532.3 1335 75.8
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.7e-136 491.1 1335 82.5
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 7.3e-118 429.9 1339 75.4
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 4.3e-86 324.3 1464 60.2
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.3e-85 322.8 1464 58.5
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-81 309.3 1455 60.1
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.7e-78 297.4 1355 55.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.4e-73 282.7 345 60.9
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.9e-70 272.3 345 64.1
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.9e-70 272.3 345 64.1
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 8.5e-66 256.9 1341 59.0
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-64 251.5 1464 61.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-62 245.7 345 57.1
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.0e-62 245.7 1352 42.5
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 6.3e-61 240.7 1356 60.8
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 5.5e-57 227.6 1466 58.9
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.2e-56 226.5 565 36.6
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.6e-56 226.1 621 33.5
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 3.9e-55 221.5 621 35.9
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-49 203.4 570 38.4
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-49 203.4 345 54.5
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 8.2e-45 187.2 570 41.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 8.2e-45 187.2 616 38.0
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.2e-43 183.3 621 32.2
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-42 180.3 570 36.7
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.0e-42 180.3 623 37.2
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.8e-42 178.3 620 33.2
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 3.8e-42 178.3 618 38.0
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-41 176.8 487 32.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 4.2e-41 174.9 625 33.8
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 5.5e-41 174.5 570 39.1
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 9.4e-41 173.7 620 30.3
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 6.1e-40 171.0 573 35.1
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.0e-39 170.2 623 29.2
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.3e-39 169.1 620 32.7
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 8.8e-39 167.2 622 35.0
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-38 166.8 620 31.6
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.0e-38 166.0 621 39.1
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.0e-38 166.0 178 62.9
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.6e-38 165.6 625 29.0
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.7e-38 164.5 604 28.6
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 4.8e-37 161.4 598 32.8
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.8e-36 159.5 615 28.9
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.4e-36 159.1 615 34.5
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 4.1e-36 158.3 615 34.1
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.4e-36 157.9 338 50.0
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.2e-35 156.8 654 27.8
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.0e-35 156.0 615 36.3
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.7e-35 155.6 613 28.5
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.9e-35 154.5 772 24.9
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.2e-34 152.5 613 28.4
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.5e-34 150.6 616 41.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 5.5e-33 147.9 624 34.5
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.5e-33 147.9 614 26.9
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 1.5e-30 139.8 109 74.3
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.5e-30 139.8 616 35.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.4e-30 138.7 668 27.4
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-29 136.7 333 43.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.3e-29 136.7 616 36.2
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.8e-29 135.6 613 26.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.8e-28 132.9 480 30.2
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 2.4e-28 132.5 642 26.8
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.1e-28 131.7 355 43.1
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 7.0e-28 131.0 341 41.9
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 7.0e-28 131.0 613 32.8
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.0e-28 131.0 431 29.0
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.2e-27 130.2 621 28.2
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.3e-26 126.7 612 31.2
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.7e-26 126.3 350 31.7
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.9e-25 122.9 626 41.9
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.5e-25 122.5 358 38.8
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.3e-25 122.1 177 50.3
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.3e-25 122.1 177 50.3
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 7.3e-25 120.9 177 50.8
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-24 120.2 410 35.4
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.6e-24 119.8 613 29.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.6e-24 119.8 218 37.6
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.1e-24 119.4 614 26.7
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.6e-24 118.6 181 49.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 6.1e-24 117.9 608 28.9
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 6.1e-24 117.9 319 41.7
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 8.0e-24 117.5 218 37.2
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.4e-23 116.7 614 25.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.0e-23 115.5 272 52.2
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 5.2e-23 114.8 178 50.6
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 8.9e-23 114.0 584 30.3
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.2e-22 113.6 613 32.6
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 3.4e-22 112.1 579 39.2
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 9.8e-22 110.5 170 48.8
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.2e-21 109.4 351 35.3
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 3.7e-21 108.6 579 38.0
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.8e-20 106.3 613 28.9
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.8e-20 106.3 171 47.4
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.8e-20 106.3 317 30.6
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 2.4e-20 105.9 271 44.6
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.4e-20 105.9 613 26.1
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.2e-20 105.5 147 46.9
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 7.0e-20 104.4 646 25.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.0e-20 104.4 629 32.9
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 7.0e-20 104.4 629 29.4
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.2e-19 103.6 493 34.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.6e-19 103.2 603 31.3
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.0e-19 102.8 147 42.9
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.7e-19 102.4 177 48.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 3.5e-19 102.1 180 46.1
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 7.8e-19 100.9 84 67.9
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.3e-18 100.1 620 31.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 3.0e-18 99.0 616 29.9
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.1e-17 97.1 170 43.5
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 1.9e-17 96.3 174 48.9
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 5.6e-17 94.7 620 27.1
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.2e-16 93.6 179 43.6
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.6e-16 93.2 173 43.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 4.7e-16 91.7 172 44.2
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.0e-15 90.5 147 38.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.4e-15 90.1 186 41.4
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.4e-15 90.1 145 39.3
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.0e-15 88.6 488 33.6
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 6.8e-15 87.8 367 27.5
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 8.9e-15 87.4 354 26.3
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 8.9e-15 87.4 612 27.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.2e-14 87.0 176 42.6
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.5e-14 86.7 634 24.8
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.0e-14 86.3 81 54.3
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.7e-13 83.2 601 28.3
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.7e-13 82.0 629 38.0
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.7e-13 82.0 629 38.0
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 4.9e-13 81.6 271 36.2
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.1e-12 78.6 81 49.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 5.4e-12 78.2 609 25.5
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 5.4e-12 78.2 172 41.9
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.0e-12 77.8 81 49.4
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 7.0e-12 77.8 619 21.6
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-11 77.0 81 49.4
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.5e-11 75.5 150 38.7
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.7e-10 73.2 173 37.6
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 3.0e-10 72.4 174 40.2
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.1e-09 70.5 81 48.1
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.5e-09 70.1 619 26.8
BcaB01g03995 Brassica carinata HOM05D003806 ORTHO05D004346 4.3e-09 68.6 76 76.3
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-08 67.0 65 58.5
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.2e-08 67.0 140 31.4
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 3.6e-08 65.5 617 29.7
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 4.7e-08 65.1 172 35.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 4.7e-08 65.1 271 28.4
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.1e-08 64.3 147 34.7
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 6.8e-07 61.2 147 29.9
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 1.5e-06 60.1 63 49.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.0e-06 59.7 144 30.6


User provided reference genes

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