Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 5.4e-149 531.2 310 100.0
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.6e-100 369.0 298 75.5
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.5e-93 345.1 268 81.7
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 8.2e-81 304.7 279 69.5
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 6.1e-76 288.5 266 67.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 4.0e-75 285.8 213 77.0
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.0e-75 285.8 243 71.2
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 6.3e-73 278.5 314 60.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 6.3e-73 278.5 314 60.2
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 6.3e-73 278.5 314 60.2
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-71 273.9 291 63.6
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.6e-71 273.9 291 63.6
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.6e-71 273.9 291 63.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-67 260.4 295 60.7
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.8e-67 260.4 295 60.7
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.2e-65 253.4 294 61.6
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.3e-53 213.0 287 57.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.1e-52 210.3 280 57.5
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.7e-52 209.1 286 57.7
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 6.1e-52 208.8 267 60.7
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.0e-50 203.8 233 58.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 9.8e-50 201.4 295 51.2
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 9.2e-48 194.9 308 52.6
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.5e-47 193.0 279 50.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 8.6e-46 188.3 313 49.8
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 8.6e-46 188.3 313 49.8
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-44 184.5 319 51.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 6.2e-44 182.2 320 50.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 6.2e-44 182.2 320 50.0
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.4e-42 176.4 285 53.0
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.6e-39 167.5 282 53.9
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.3e-30 137.9 224 46.4
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 8.9e-27 125.2 222 45.5
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.9e-26 121.7 249 43.8
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.3e-25 121.3 217 47.5
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.7e-25 120.9 213 46.0
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.9e-25 120.2 244 42.6
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.8e-25 119.8 225 45.8
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 7.1e-24 115.5 197 48.7
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.6e-23 114.4 199 50.3
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.6e-23 114.4 220 45.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 4.6e-23 112.8 317 37.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 7.8e-23 112.1 218 47.2
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.7e-22 110.9 224 43.8
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.7e-22 110.9 230 44.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.3e-22 110.5 224 43.8
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.0e-22 110.2 224 43.8
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 5.1e-22 109.4 220 45.0
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 5.1e-22 109.4 306 40.5
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 6.6e-22 109.0 197 49.2
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 6.6e-22 109.0 224 43.8
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 8.7e-22 108.6 233 42.9
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.5e-21 107.8 196 45.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-21 107.8 309 36.9
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.5e-21 107.8 289 38.1
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.5e-21 107.8 224 44.6
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.5e-21 107.1 225 42.7
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.5e-21 107.1 235 39.1
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 2.5e-21 107.1 238 42.9
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.3e-21 106.7 226 43.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.3e-21 106.7 192 47.9
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.3e-21 106.3 306 35.9
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 7.3e-21 105.5 237 43.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 7.3e-21 105.5 223 42.6
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 7.3e-21 105.5 245 41.6
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.3e-21 105.5 224 42.9
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.2e-20 104.8 222 44.1
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.6e-20 104.4 220 42.7
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 6.2e-20 102.4 216 42.6
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.4e-19 101.3 215 43.3
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.4e-19 100.5 220 44.1
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.4e-19 100.5 207 44.9
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.4e-19 100.5 208 44.7
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 9.0e-19 98.6 187 49.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.2e-18 98.2 222 40.1
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-18 97.8 220 42.3
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.0e-18 97.4 228 43.4
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.0e-18 97.4 223 41.7
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.4e-18 96.7 238 39.9
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.4e-18 96.7 234 43.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 4.4e-18 96.3 196 43.4
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 5.8e-18 95.9 243 39.1
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.6e-18 95.5 218 45.4
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 9.9e-18 95.1 199 43.7
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.3e-17 94.7 236 41.5
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.7e-17 94.4 225 41.8
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.9e-17 93.6 226 42.0
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 4.9e-17 92.8 205 44.4
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 6.4e-17 92.4 234 41.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.4e-17 92.4 208 43.8
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 8.4e-17 92.0 244 39.3
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 8.4e-17 92.0 244 39.3
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.1e-16 91.7 190 43.7
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-16 91.7 205 41.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-16 91.7 298 36.6
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.4e-16 91.3 277 38.6
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.4e-16 90.5 302 33.8
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.4e-16 90.5 231 42.0
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.2e-16 89.7 188 44.1
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 5.4e-16 89.4 187 44.9
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 7.1e-16 89.0 226 39.4
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 9.3e-16 88.6 225 39.6
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.5e-15 86.7 290 36.2
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.5e-15 86.7 285 35.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.6e-15 86.3 226 42.5
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 7.8e-15 85.5 138 51.4
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 7.8e-15 85.5 222 39.2
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-14 84.7 236 37.7
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 3.0e-14 83.6 225 40.0
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.9e-14 83.2 168 45.8
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.9e-14 83.2 293 35.2
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 6.6e-14 82.4 198 42.4
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 8.7e-14 82.0 225 40.0
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 8.7e-14 82.0 236 39.4
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.5e-13 81.3 323 32.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.6e-13 79.3 217 37.3
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 9.6e-13 78.6 198 41.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 9.6e-13 78.6 207 37.7
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.3e-12 78.2 213 36.2
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.1e-12 77.4 193 37.3
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 4.8e-12 76.3 219 35.6
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.4e-11 74.7 165 41.8
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.8e-11 74.3 291 33.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.1e-11 73.6 190 38.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.0e-11 73.2 206 38.8
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.2e-10 71.6 119 50.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.8e-10 69.3 205 36.1
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 9.9e-10 68.6 167 38.3
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.9e-09 67.0 226 36.7
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.8e-09 66.6 240 30.8
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.4e-09 65.9 217 32.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 8.4e-09 65.5 317 30.9
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 2.1e-07 60.8 229 34.9
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.7e-07 60.5 225 32.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.0e-07 59.3 156 37.8
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 2.3e-06 57.4 185 36.2


User provided reference genes

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