Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 7.8e-200 700.3 361 100.0
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 3.8e-146 521.9 392 76.0
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 6.3e-125 451.4 362 69.1
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.2e-123 447.2 372 68.5
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.0e-122 444.1 357 68.3
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.0e-119 432.6 361 67.6
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 4.0e-119 432.2 366 68.0
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.2e-115 420.6 370 65.9
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-112 410.6 366 64.5
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 2.1e-112 409.8 363 66.1
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 9.9e-94 347.8 311 65.6
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.3e-85 320.9 169 88.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 3.5e-83 312.8 168 88.7
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.8e-80 303.1 168 85.7
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 4.5e-78 295.8 169 84.6
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 1.7e-77 293.9 169 83.4
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 9.3e-76 288.1 168 81.0
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 4.6e-75 285.8 169 82.8
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 2.1e-72 276.9 169 78.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.4e-68 264.2 172 69.2
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.6e-67 260.8 170 68.8
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 7.9e-67 258.5 165 70.9
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.8e-66 257.3 165 70.9
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.9e-66 256.1 165 70.3
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.9e-66 256.1 170 68.8
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 5.1e-66 255.8 165 70.3
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 5.1e-66 255.8 167 68.9
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 6.7e-66 255.4 170 68.8
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.5e-65 254.2 164 70.1
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.5e-65 253.4 167 70.7
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 2.5e-65 253.4 164 70.1
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 3.3e-65 253.1 164 69.5
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 3.3e-65 253.1 167 68.9
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 3.3e-65 253.1 163 70.6
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 5.6e-65 252.3 171 67.8
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 7.4e-65 251.9 164 68.9
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 1.6e-64 250.8 170 68.8
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 2.1e-64 250.4 163 70.6
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.8e-64 250.0 162 69.1
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.8e-64 250.0 162 69.1
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 2.8e-64 250.0 165 69.7
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 3.7e-64 249.6 167 68.3
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.7e-64 249.6 164 68.9
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.1e-63 248.1 164 68.3
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.8e-63 247.3 167 68.9
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.8e-63 247.3 164 68.3
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 6.9e-63 245.4 167 67.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 9.0e-63 245.0 169 65.7
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.2e-62 244.6 164 67.7
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.2e-62 244.6 167 68.3
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 1.2e-62 244.6 164 67.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.5e-62 244.2 159 69.2
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.5e-62 244.2 165 67.3
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 2.0e-62 243.8 165 65.5
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 2.0e-62 243.8 160 70.6
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.6e-62 243.4 164 67.7
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.6e-62 243.4 168 67.3
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 7.6e-62 241.9 168 65.5
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.0e-61 241.5 161 67.1
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.0e-61 241.5 166 66.9
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.3e-61 241.1 165 66.1
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 2.2e-61 240.4 167 67.1
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 2.2e-61 240.4 169 63.9
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.8e-61 239.6 165 67.9
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 3.8e-61 239.6 168 64.9
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.9e-61 239.2 165 65.5
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 4.9e-61 239.2 157 69.4
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 6.5e-61 238.8 165 65.5
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.1e-60 238.0 172 62.8
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.4e-60 237.7 170 62.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.9e-60 237.3 160 68.1
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.9e-60 237.3 168 66.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.2e-60 236.5 167 66.5
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.2e-60 236.5 159 69.2
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 5.5e-60 235.7 168 64.3
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 7.1e-60 235.3 164 64.6
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 9.3e-60 235.0 170 65.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 9.3e-60 235.0 162 64.2
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.1e-59 233.8 163 67.5
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.7e-59 233.4 164 65.9
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 4.6e-59 232.6 166 65.7
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.6e-59 232.6 148 70.9
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.0e-58 231.5 163 65.0
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.3e-58 231.1 169 63.3
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.8e-58 230.7 165 63.6
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.8e-58 230.7 161 65.2
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.0e-58 229.9 163 66.3
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 3.9e-58 229.6 165 63.6
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 5.1e-58 229.2 169 62.7
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 6.7e-58 228.8 165 63.0
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 8.7e-58 228.4 134 82.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 3.3e-57 226.5 163 62.6
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.7e-57 225.7 171 62.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.3e-56 224.6 163 64.4
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.8e-56 222.6 164 62.2
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.4e-55 221.1 166 59.6
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.4e-55 221.1 166 59.6
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 6.5e-53 212.2 157 60.5
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.2e-52 209.5 162 60.5
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 9.3e-52 208.4 152 62.5
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.6e-51 206.1 136 68.4
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 4.6e-51 206.1 136 66.9
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.3e-50 204.5 139 64.7
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.3e-48 198.0 135 68.1
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 4.8e-48 196.1 138 65.9
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.0e-46 190.7 159 57.2
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 1.6e-43 181.0 131 77.1
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.4e-42 177.9 176 46.0
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 5.7e-41 172.6 140 60.7
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 1.3e-40 171.4 147 51.0
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.1e-39 168.3 155 48.4
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 3.8e-37 159.8 143 69.2
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 3.6e-35 153.3 137 66.4
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 3.6e-35 153.3 135 68.9
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.9e-34 149.8 155 44.5
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 5.2e-34 149.4 131 64.9
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 6.7e-34 149.1 128 66.4
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 5.7e-33 146.0 131 71.8
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 9.7e-33 145.2 131 67.9
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 1.7e-32 144.4 129 63.6
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 1.7e-32 144.4 127 64.6
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 6.3e-32 142.5 130 62.3
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.1e-31 141.7 129 64.3
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 1.4e-31 141.4 128 60.9
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.8e-31 141.0 130 60.0
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 2.4e-31 140.6 127 63.0
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 2.4e-31 140.6 127 63.0
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 4.1e-31 139.8 131 66.4
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 1.2e-30 138.3 129 63.6
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 2.0e-30 137.5 130 60.0
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 2.0e-30 137.5 130 60.0
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.0e-30 137.5 158 44.9
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 5.9e-30 136.0 130 60.8
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 1.0e-29 135.2 131 58.8
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.2e-28 130.2 127 54.3
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 1.2e-27 128.3 127 60.6
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.0e-22 110.9 172 38.4
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 5.5e-20 102.8 71 67.6
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 3.0e-18 97.1 185 35.1
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 3.4e-17 93.6 145 42.1
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 5.7e-17 92.8 49 77.6
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.5e-12 77.4 97 41.2
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.1e-07 62.0 113 36.3
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 1.4e-07 61.6 72 45.8
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.4e-07 61.6 96 42.7
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.4e-07 60.8 146 26.0
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.1e-07 60.5 146 26.7
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 7.0e-07 59.3 154 27.3
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 9.2e-07 58.9 152 27.0
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 9.2e-07 58.9 152 27.0
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 9.2e-07 58.9 162 25.9
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 1.2e-06 58.5 96 39.6
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.2e-06 58.5 150 26.0
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 1.2e-06 58.5 104 35.6
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.6e-06 58.2 154 27.3
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.6e-06 58.2 152 27.0
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.6e-06 58.2 152 27.0
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.6e-06 58.2 152 27.0
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.6e-06 58.2 156 26.9
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.6e-06 58.2 150 26.0
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 2.0e-06 57.8 153 25.5
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 2.0e-06 57.8 150 26.0
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 2.7e-06 57.4 152 27.0
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.7e-06 57.4 152 27.0
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 2.7e-06 57.4 150 28.0
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.5e-06 57.0 152 27.0
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 3.5e-06 57.0 147 26.5
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 4.5e-06 56.6 154 26.6
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 5.9e-06 56.2 121 37.2
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 5.9e-06 56.2 147 27.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 5.9e-06 56.2 158 27.2
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 5.9e-06 56.2 97 40.2
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 5.9e-06 56.2 104 38.5
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 5.9e-06 56.2 116 35.3
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 5.9e-06 56.2 153 26.1
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 5.9e-06 56.2 149 26.8
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 7.8e-06 55.8 158 25.9
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 7.8e-06 55.8 158 25.9
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.8e-06 55.8 158 25.9


User provided reference genes

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