Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 8.3e-44 179.9 84 100.0
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 8.3e-44 179.9 84 100.0
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.7e-41 172.2 86 96.5
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.9e-40 168.7 84 94.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 4.3e-40 167.5 84 96.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 1.2e-39 166.0 86 90.7
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.8e-39 164.9 81 90.1
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.6e-39 164.5 80 91.2
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.6e-39 164.5 80 91.2
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.7e-39 164.1 81 90.1
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.1e-39 163.7 81 91.4
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 6.1e-39 163.7 82 93.9
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 6.1e-39 163.7 80 91.2
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 6.1e-39 163.7 83 88.0
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.0e-38 162.9 86 88.4
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.0e-38 162.9 86 88.4
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.0e-38 162.9 86 88.4
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.0e-38 162.9 80 91.2
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.0e-38 162.9 83 86.7
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.4e-38 162.5 80 91.2
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 1.4e-38 162.5 80 91.2
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.4e-38 162.5 83 86.7
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.4e-38 162.5 80 91.2
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 1.4e-38 162.5 84 90.5
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.8e-38 162.2 80 90.0
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.8e-38 162.2 83 89.2
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.8e-38 162.2 80 90.0
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.8e-38 162.2 80 90.0
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.8e-38 162.2 83 86.7
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 2.3e-38 161.8 86 87.2
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 3.0e-38 161.4 79 91.1
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 3.0e-38 161.4 82 91.5
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 3.0e-38 161.4 82 91.5
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 3.0e-38 161.4 84 89.3
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 88.8
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.0e-38 161.4 83 89.2
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 90.0
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 4.0e-38 161.0 82 92.7
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 91.0
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 4.0e-38 161.0 82 90.2
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 5.2e-38 160.6 80 90.0
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 5.2e-38 160.6 80 90.0
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 5.2e-38 160.6 84 89.3
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 5.2e-38 160.6 84 89.3
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 5.2e-38 160.6 84 89.3
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 5.2e-38 160.6 80 88.8
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 5.2e-38 160.6 80 90.0
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 5.2e-38 160.6 81 87.7
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 6.8e-38 160.2 83 85.5
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.8e-38 160.2 82 90.2
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 90.0
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.8e-38 160.2 81 87.7
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 88.8
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.8e-38 160.2 80 91.2
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.8e-38 160.2 83 86.7
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 8.9e-38 159.8 80 88.8
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 8.9e-38 159.8 81 85.2
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 8.9e-38 159.8 80 88.8
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 8.9e-38 159.8 80 88.8
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 8.9e-38 159.8 80 90.0
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 1.2e-37 159.5 83 86.7
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.2e-37 159.5 80 90.0
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.2e-37 159.5 80 88.8
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.2e-37 159.5 80 88.8
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.2e-37 159.5 86 87.2
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.2e-37 159.5 80 88.8
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.5e-37 159.1 80 88.8
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.5e-37 159.1 80 87.5
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.5e-37 159.1 80 88.8
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 1.5e-37 159.1 79 91.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.5e-37 159.1 83 85.5
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 89.7
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 1.5e-37 159.1 80 88.8
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.5e-37 159.1 80 90.0
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 2.0e-37 158.7 80 90.0
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 89.7
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 2.0e-37 158.7 80 88.8
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.6e-37 158.3 78 91.0
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 2.6e-37 158.3 80 88.8
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 2.6e-37 158.3 80 88.8
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 2.6e-37 158.3 80 88.8
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.6e-37 158.3 80 88.8
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 2.6e-37 158.3 80 88.8
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.4e-37 157.9 78 89.7
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.4e-37 157.9 78 89.7
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 3.4e-37 157.9 75 93.3
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.4e-37 157.9 82 89.0
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 4.4e-37 157.5 86 86.0
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 4.4e-37 157.5 78 89.7
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 4.4e-37 157.5 76 90.8
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.4e-37 157.5 84 85.7
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 4.4e-37 157.5 80 88.8
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 5.7e-37 157.1 78 89.7
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 5.7e-37 157.1 83 84.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 5.7e-37 157.1 83 84.3
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 9.8e-37 156.4 92 82.6
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 1.3e-36 156.0 82 87.8
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.3e-36 156.0 80 87.5
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 1.3e-36 156.0 80 86.2
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.3e-36 156.0 80 87.5
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.3e-36 156.0 80 87.5
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.3e-36 156.0 80 87.5
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.7e-36 155.6 83 84.3
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.7e-36 155.6 80 85.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.7e-36 155.6 74 94.6
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.7e-36 155.6 80 86.2
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.2e-36 155.2 78 88.5
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.2e-36 155.2 80 87.5
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 2.9e-36 154.8 80 91.2
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 3.7e-36 154.5 76 90.8
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 6.4e-36 153.7 75 92.0
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 8.3e-36 153.3 79 86.1
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 8.3e-36 153.3 79 86.1
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 8.3e-36 153.3 78 85.9
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.4e-35 152.5 82 86.6
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.8e-35 152.1 80 86.2
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.4e-35 151.8 74 91.9
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.4e-35 151.8 74 91.9
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.4e-35 151.8 74 91.9
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.4e-35 151.8 74 91.9
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 3.2e-35 151.4 80 85.0
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.2e-34 149.4 80 81.2
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.6e-34 149.1 84 84.5
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 2.0e-34 148.7 75 89.3
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 2.7e-34 148.3 82 78.0
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.5e-34 147.9 90 77.8
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 3.5e-34 147.9 96 74.0
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.1e-32 142.9 82 79.3
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.6e-31 139.0 80 73.8
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 1.1e-30 136.3 70 82.9
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.4e-29 131.0 81 76.5
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 4.4e-29 131.0 68 80.9
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.9e-28 128.3 91 65.9
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.4e-27 125.9 69 75.4
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.4e-27 125.2 63 88.9
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 3.2e-27 124.8 65 84.6
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.0e-25 119.8 61 86.9
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 8.6e-25 116.7 59 83.1
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.2e-23 112.8 63 79.4
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 2.2e-20 102.1 76 63.2
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 6.4e-20 100.5 55 83.6
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.4e-19 99.4 48 91.7
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 5.6e-16 87.4 47 85.1
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.6e-15 85.9 44 84.1
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 4.0e-14 81.3 83 49.4
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.2e-13 79.7 46 73.9
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.5e-13 79.3 38 89.5
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 2.6e-13 78.6 39 84.6
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 2.6e-13 78.6 39 84.6
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 4.4e-13 77.8 58 62.1
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.8e-13 77.4 37 91.9
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 7.6e-13 77.0 47 76.6
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.7e-12 75.9 53 67.9
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.8e-12 74.7 39 82.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.1e-11 70.5 66 54.5
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.6e-10 69.3 38 84.2
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.0e-09 66.6 38 78.9
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.3e-09 66.2 51 58.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.3e-08 61.6 29 86.2
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.2e-07 59.7 39 74.4
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 5.2e-06 54.3 29 79.3


User provided reference genes

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