Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.1e-155 552.4 281 100.0
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.8e-144 515.4 276 94.9
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.2e-134 483.4 284 88.7
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 8.2e-104 380.9 301 73.1
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 7.7e-102 374.4 269 78.4
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.7e-96 356.7 249 78.7
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.9e-95 351.3 261 76.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.2e-94 350.5 249 78.3
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 2.0e-94 349.7 261 76.2
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 8.5e-93 344.4 249 77.1
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 8.5e-93 344.4 249 77.1
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 8.5e-93 344.4 249 77.1
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 9.4e-76 287.7 277 63.2
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.0e-65 253.4 251 59.4
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-65 253.4 274 55.8
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 4.4e-65 252.3 274 55.8
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.3e-64 250.8 250 60.8
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-64 250.8 282 54.6
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.8e-64 249.6 248 59.3
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.7e-64 249.2 274 55.5
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 6.3e-64 248.4 272 56.2
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 8.3e-64 248.1 269 56.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.8e-63 246.9 292 54.5
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 2.4e-63 246.5 254 58.7
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.1e-63 245.7 184 75.5
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 9.2e-63 244.6 228 62.7
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.6e-62 243.8 235 62.6
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 2.0e-62 243.4 255 60.8
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.7e-62 243.0 257 57.6
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 3.5e-62 242.7 268 55.6
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.5e-62 242.3 255 56.5
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.5e-62 242.3 255 56.5
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.9e-62 241.9 260 58.8
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.0e-61 241.1 250 60.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.3e-61 240.7 260 58.5
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.7e-61 240.4 246 57.3
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.7e-61 240.4 254 58.7
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.9e-61 239.6 255 60.0
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.8e-61 239.2 267 54.7
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 6.6e-61 238.4 260 56.9
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 1.1e-60 237.7 249 56.6
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.9e-60 236.9 228 61.8
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.5e-60 236.5 268 56.3
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 3.3e-60 236.1 228 61.8
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 4.3e-60 235.7 238 60.9
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 7.3e-60 235.0 256 58.2
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 3.6e-59 232.6 267 54.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.7e-59 232.3 254 57.5
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 4.7e-59 232.3 259 57.1
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 4.7e-59 232.3 245 56.7
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 4.7e-59 232.3 247 57.9
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 8.0e-59 231.5 247 57.9
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.4e-58 230.7 259 57.1
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.4e-58 230.7 247 57.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 5.2e-58 228.8 269 55.4
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 5.2e-58 228.8 256 55.5
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 5.2e-58 228.8 249 56.6
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.5e-57 227.3 247 55.9
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.0e-57 226.9 268 55.2
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.6e-57 226.5 256 55.1
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.6e-57 226.5 277 52.7
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 5.7e-57 225.3 253 55.7
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.5e-57 224.9 199 63.8
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 9.8e-57 224.6 253 54.5
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 2.2e-56 223.4 270 53.7
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.2e-56 223.4 209 60.8
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 8.3e-56 221.5 254 54.3
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 8.3e-56 221.5 305 49.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.4e-55 220.7 250 54.4
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.8e-55 220.3 272 53.7
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.8e-55 220.3 229 56.8
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.4e-55 219.9 257 54.5
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.4e-55 219.9 255 56.1
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.2e-55 219.5 227 59.0
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.1e-55 219.2 199 62.8
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 4.1e-55 219.2 243 54.7
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 5.4e-55 218.8 259 53.7
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 9.2e-55 218.0 263 52.9
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.7e-54 216.5 253 53.8
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.0e-53 212.2 253 53.4
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 6.6e-53 211.8 237 55.7
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.5e-52 210.7 263 53.6
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 4.3e-52 209.1 261 52.5
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 5.6e-52 208.8 321 45.5
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 9.5e-52 208.0 202 58.4
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 8.9e-50 201.4 226 55.8
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.2e-49 201.1 272 50.4
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 1.5e-49 200.7 272 50.4
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.0e-49 200.3 263 50.2
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 4.4e-49 199.1 229 55.5
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.4e-47 193.4 202 57.9
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 4.6e-46 189.1 260 49.2
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 6.0e-46 188.7 225 55.1
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 7.8e-46 188.3 251 50.6
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.0e-45 188.0 237 51.5
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.9e-45 186.0 273 47.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 6.6e-45 185.3 252 50.4
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.1e-44 184.5 198 58.1
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.3e-44 183.0 228 49.6
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 5.6e-44 182.2 235 51.1
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 6.8e-42 175.3 198 55.1
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.6e-41 173.3 228 49.1
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.4e-41 172.9 198 54.5
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 2.9e-40 169.9 167 62.9
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 2.9e-40 169.9 218 50.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 4.9e-40 169.1 240 49.2
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.4e-39 166.8 194 54.1
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 5.4e-39 165.6 190 53.2
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.6e-38 164.1 204 54.4
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.5e-38 162.9 225 51.6
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.3e-37 161.0 199 50.8
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.5e-36 157.5 206 51.5
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 8.1e-35 151.8 184 53.8
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 2.0e-33 147.1 215 45.1
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.9e-32 143.3 193 49.2
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 3.2e-31 139.8 324 37.0
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 7.1e-31 138.7 236 43.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.7e-27 125.9 193 46.6
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 9.9e-25 118.2 266 36.8
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.6e-22 109.4 263 38.4
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.7e-21 107.5 240 37.5
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.0e-21 106.7 137 51.8
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.6e-19 100.9 212 40.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 3.4e-17 93.2 141 47.5
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 3.8e-16 89.7 56 76.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.2e-14 84.7 129 48.8
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 4.6e-14 82.8 82 53.7
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.5e-12 77.0 149 41.6
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 4.3e-12 76.3 53 83.0
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 2.1e-11 73.9 59 59.3
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 1.8e-10 70.9 63 69.8
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.5e-09 67.8 70 51.4
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 2.0e-09 67.4 63 68.3
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.7e-08 64.3 36 83.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.7e-08 64.3 36 83.3
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 6.4e-08 62.4 36 83.3
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.1e-07 61.6 36 80.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 4.2e-07 59.7 37 81.1
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.2e-07 59.7 37 81.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.2e-07 59.7 37 81.1
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 4.2e-07 59.7 37 81.1
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.2e-07 59.7 37 81.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 7.1e-07 58.9 36 77.8
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.2e-06 58.2 36 77.8
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.6e-06 57.8 36 77.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.6e-06 57.8 36 77.8
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 2.7e-06 57.0 280 28.2


User provided reference genes

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