Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 9.5e-250 866.3 417 100.0
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 8.4e-238 826.6 417 95.4
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.0e-235 819.7 417 94.0
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.3e-227 792.7 416 91.6
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.9e-226 788.9 410 92.0
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.1e-220 768.8 410 89.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.7e-220 768.5 410 89.8
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 3.5e-220 768.1 410 89.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 7.9e-220 766.9 410 89.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 7.9e-220 766.9 410 89.5
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 6.7e-219 763.8 411 89.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 8.1e-217 756.9 412 89.1
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.0e-208 726.9 413 84.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.6e-207 725.3 413 84.5
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 6.3e-201 704.1 410 83.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 2.2e-198 695.7 411 80.3
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.1e-176 622.1 408 71.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 4.5e-175 618.2 408 71.3
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.3e-174 616.7 400 71.2
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.9e-174 615.5 410 70.7
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.0e-174 614.8 408 71.1
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 8.5e-174 614.0 407 71.0
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.2e-173 612.1 405 70.9
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.2e-173 610.9 414 69.3
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.7e-172 609.0 408 70.1
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 4.7e-172 608.2 408 69.4
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 4.7e-172 608.2 408 69.4
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.6e-170 602.4 408 69.1
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.7e-169 599.7 404 71.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.7e-169 599.7 401 69.6
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.2e-169 599.4 400 69.8
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 2.8e-169 599.0 404 70.0
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 8.3e-169 597.4 414 67.9
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.8e-168 596.3 404 70.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 3.1e-168 595.5 420 66.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.0e-166 590.5 408 67.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.7e-166 589.7 396 69.2
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.5e-166 587.8 396 68.7
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 7.2e-165 584.3 406 66.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-164 583.2 396 67.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-164 583.2 396 68.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.8e-163 579.7 410 67.3
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.3e-163 579.3 396 67.7
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.0e-163 578.9 403 68.0
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.2e-163 578.2 403 67.2
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.5e-162 576.6 396 68.2
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.5e-162 576.6 408 66.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.0e-162 576.2 396 67.7
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.7e-161 573.2 411 67.6
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.8e-161 572.4 405 66.2
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.3e-161 570.9 397 67.5
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 9.2e-160 567.4 417 65.2
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.0e-159 566.2 395 66.3
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.5e-159 565.5 407 64.9
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.9e-158 562.4 394 66.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 8.6e-158 560.8 409 64.5
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.5e-157 559.3 396 65.9
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.6e-157 558.1 409 64.1
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.0e-155 553.9 411 65.2
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 5.2e-155 551.6 407 63.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.6e-154 549.3 404 62.4
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.4e-154 548.9 386 65.5
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.4e-154 548.9 401 64.1
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.4e-154 548.5 401 64.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 9.8e-154 547.4 402 62.7
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.9e-153 545.8 403 61.8
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.9e-153 545.8 416 63.0
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.9e-153 545.8 402 64.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.2e-152 542.3 408 63.7
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 5.4e-152 541.6 406 64.0
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 5.9e-151 538.1 393 64.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.0e-150 537.3 394 64.5
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.3e-150 536.2 400 62.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 5.0e-150 535.0 396 64.1
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 8.6e-150 534.3 400 61.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 8.6e-150 534.3 409 62.6
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-149 533.9 419 61.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.9e-149 533.1 390 63.1
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.5e-149 532.7 400 62.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.3e-149 532.3 398 62.1
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.3e-149 532.3 410 61.7
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 9.5e-149 530.8 418 62.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.2e-148 530.4 400 62.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.6e-148 530.0 396 62.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.6e-148 528.9 390 63.1
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 4.7e-148 528.5 401 60.3
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.2e-148 528.1 397 62.0
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.8e-147 526.6 401 60.6
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 5.2e-147 525.0 410 60.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.6e-146 522.7 395 60.0
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 3.4e-146 522.3 394 62.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.4e-146 521.9 397 61.5
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 5.8e-146 521.5 400 61.2
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 9.8e-146 520.8 416 59.9
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.7e-145 520.0 401 60.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 3.7e-145 518.8 411 61.6
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.4e-144 516.9 401 61.8
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.7e-143 512.7 407 62.9
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 4.6e-143 511.9 393 59.8
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 7.8e-143 511.1 393 59.0
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.3e-142 510.4 393 59.0
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-142 510.4 390 60.5
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-142 510.4 390 60.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.7e-142 510.0 390 60.8
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 3.0e-142 509.2 411 59.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 5.0e-142 508.4 394 60.9
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 3.3e-141 505.8 389 60.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 7.3e-141 504.6 397 59.2
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-139 500.7 416 58.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.0e-138 496.5 399 58.9
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.8e-138 495.0 375 60.5
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.8e-138 495.0 375 60.5
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-137 493.8 407 58.7
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 9.2e-136 487.6 389 58.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.5e-135 485.7 387 60.2
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.0e-134 482.6 389 56.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.4e-129 464.9 418 57.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 6.0e-127 458.4 396 57.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.3e-126 457.2 393 54.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.5e-125 453.8 405 55.8
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.8e-123 446.8 403 55.6
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.4e-123 446.4 402 54.2
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.4e-120 437.2 412 51.5
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.6e-116 422.5 411 51.3
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.7e-113 413.7 400 53.0
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.4e-112 410.6 381 54.6
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.6e-111 407.1 400 53.0
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.4e-104 384.0 408 47.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 3.2e-104 382.9 393 51.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.3e-102 377.5 401 49.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.5e-98 364.0 416 45.4
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 5.8e-98 362.1 406 47.8
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-95 354.4 408 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.6e-95 354.0 401 45.6
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-87 327.0 408 43.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 8.2e-84 315.1 258 56.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 6.5e-81 305.4 408 43.6
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 3.3e-77 293.1 397 41.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.8e-76 289.3 400 41.5
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 3.1e-75 286.6 413 42.6
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.7e-73 280.8 400 41.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-70 270.4 229 57.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-63 246.1 189 62.4
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.2e-60 237.3 158 69.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.4e-59 234.6 431 34.3
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.0e-37 161.0 154 53.2
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 6.0e-34 149.4 116 61.2
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-32 144.4 375 28.3
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.1e-31 141.0 95 71.6
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.2e-29 135.2 316 29.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.2e-26 125.2 81 70.4
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.9e-21 105.5 409 26.4
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.6e-10 71.6 40 77.5
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.5e-08 64.3 49 61.2
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 7.3e-08 62.8 58 48.3


User provided reference genes

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