Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.2e-41 172.6 79 100.0
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 1.3e-22 109.4 65 76.9
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.3e-22 109.4 65 76.9
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 3.2e-21 104.8 65 73.8
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 6.0e-20 100.5 65 72.3
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 6.0e-20 100.5 65 72.3
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 2.3e-19 98.6 65 70.8
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 3.9e-19 97.8 65 69.2
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 3.9e-19 97.8 65 69.2
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 3.9e-19 97.8 65 69.2
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 3.9e-19 97.8 65 69.2
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 3.9e-19 97.8 65 69.2
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 5.1e-19 97.4 65 70.8
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 1.9e-18 95.5 65 69.2
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 1.9e-18 95.5 65 67.7
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 5.6e-18 94.0 65 70.8
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 7.3e-18 93.6 65 69.2
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 9.6e-18 93.2 65 64.6
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 9.6e-18 93.2 65 66.2
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 9.6e-18 93.2 73 60.3
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 9.6e-18 93.2 65 69.2
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 1.3e-17 92.8 65 67.7
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.6e-17 92.4 65 67.7
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 1.6e-17 92.4 65 67.7
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 1.6e-17 92.4 65 67.7
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 1.6e-17 92.4 65 67.7
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 1.6e-17 92.4 65 67.7
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 1.6e-17 92.4 65 66.2
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 1.6e-17 92.4 73 64.4
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 2.1e-17 92.0 65 69.2
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.1e-17 92.0 65 66.2
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 2.1e-17 92.0 65 67.7
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 64.6
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 2.8e-17 91.7 65 67.7
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 64.6
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 64.6
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 66.2
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 64.6
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 3.6e-17 91.3 65 67.7
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 4.8e-17 90.9 65 66.2
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 4.8e-17 90.9 65 64.6
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 4.8e-17 90.9 65 67.7
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 4.8e-17 90.9 65 66.2
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 4.8e-17 90.9 65 66.2
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 6.2e-17 90.5 65 67.7
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 64.6
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 6.2e-17 90.5 65 66.2
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 8.1e-17 90.1 73 58.9
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 8.1e-17 90.1 65 64.6
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 8.1e-17 90.1 65 66.2
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 1.1e-16 89.7 65 66.2
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 1.1e-16 89.7 65 66.2
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 1.1e-16 89.7 65 67.7
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.1e-16 89.7 65 64.6
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 1.1e-16 89.7 73 63.0
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 1.1e-16 89.7 65 66.2
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 1.4e-16 89.4 65 64.6
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 1.4e-16 89.4 73 61.6
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 1.4e-16 89.4 73 61.6
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 1.4e-16 89.4 65 66.2
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 1.4e-16 89.4 65 63.1
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 1.8e-16 89.0 65 64.6
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 1.8e-16 89.0 72 62.5
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 1.8e-16 89.0 65 64.6
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 1.8e-16 89.0 65 64.6
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 1.8e-16 89.0 65 66.2
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 2.4e-16 88.6 64 64.1
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 2.4e-16 88.6 65 64.6
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 2.4e-16 88.6 65 64.6
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 2.4e-16 88.6 65 64.6
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 3.1e-16 88.2 65 63.1
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 3.1e-16 88.2 65 64.6
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 3.1e-16 88.2 65 66.2
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 3.1e-16 88.2 65 66.2
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 4.0e-16 87.8 65 61.5
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 4.0e-16 87.8 65 64.6
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 4.0e-16 87.8 65 64.6
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 5.3e-16 87.4 65 64.6
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 6.9e-16 87.0 65 63.1
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 1.5e-15 85.9 66 65.2
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 3.4e-15 84.7 65 58.5
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 5.8e-15 84.0 80 57.5
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 5.8e-15 84.0 65 58.5
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 7.6e-15 83.6 65 60.0
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 1.3e-14 82.8 65 63.1
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 6.4e-14 80.5 65 60.0
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 8.4e-14 80.1 83 51.8
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.1e-13 79.7 65 61.5
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.4e-13 79.3 65 53.8
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 3.2e-13 78.2 65 53.8
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 9.3e-13 76.6 65 50.8
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 2.7e-12 75.1 65 50.8
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 1.0e-11 73.2 57 61.4
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.3e-11 72.0 65 49.2
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 3.0e-11 71.6 65 52.3
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.3e-09 66.2 71 50.7
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 1.6e-09 65.9 68 48.5
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 3.7e-09 64.7 49 65.3
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 1.1e-08 63.2 45 68.9
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 1.4e-08 62.8 45 68.9
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 1.8e-08 62.4 45 68.9
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 4.0e-08 61.2 70 47.1
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 5.3e-08 60.8 45 66.7
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 1.5e-07 59.3 50 64.0
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 2.6e-07 58.5 75 44.0
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 2.6e-07 58.5 45 64.4
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 1.3e-06 56.2 45 55.6
C01p18700 Brassica napus HOM05D005148 ORTHO05D006218 2.9e-06 55.1 39 64.1


User provided reference genes

Program Settings