Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.4e-44 182.6 93 100.0
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.6e-43 179.1 93 97.8
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.5e-41 172.6 93 93.5
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 4.3e-41 171.0 93 95.7
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 5.6e-41 170.6 93 92.5
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 7.3e-41 170.2 93 94.6
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 5.2e-39 164.1 93 87.1
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 6.8e-39 163.7 93 91.4
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 8.9e-39 163.3 93 90.3
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 9.8e-38 159.8 93 88.2
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 1.7e-37 159.1 93 88.2
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 2.2e-37 158.7 93 86.0
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 1.4e-36 156.0 93 87.1
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 1.4e-36 156.0 93 87.1
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.4e-36 156.0 93 82.8
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 7.0e-36 153.7 93 81.7
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.0e-35 152.1 93 83.9
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.0e-35 152.1 93 83.9
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 3.5e-35 151.4 91 81.3
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 4.6e-35 151.0 93 82.8
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 6.0e-35 150.6 93 82.8
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 7.8e-35 150.2 93 81.7
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 4.3e-33 144.4 93 79.6
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.3e-33 144.4 93 77.4
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.6e-33 144.1 93 77.4
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 7.3e-33 143.7 93 78.5
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.3e-33 143.7 93 75.3
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.3e-33 143.7 93 75.3
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.1e-32 142.1 93 75.3
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 8.1e-32 140.2 95 75.8
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 1.1e-31 139.8 93 74.2
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.8e-31 139.0 83 80.7
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 2.3e-31 138.7 93 73.1
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 3.1e-31 138.3 93 73.1
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 4.0e-31 137.9 95 76.8
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.2e-31 137.5 79 81.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 6.8e-31 137.1 93 71.0
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 6.8e-31 137.1 94 74.5
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 8.9e-31 136.7 94 71.3
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 71.0
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 2.0e-30 135.6 93 72.0
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 69.9
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 69.9
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 3.4e-30 134.8 93 72.0
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 3.4e-30 134.8 93 72.0
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 3.4e-30 134.8 95 72.6
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 4.4e-30 134.4 93 72.0
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 7.5e-30 133.7 94 70.2
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 7.5e-30 133.7 94 70.2
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 68.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 68.8
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 7.5e-30 133.7 94 73.4
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 9.8e-30 133.3 93 67.7
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 9.8e-30 133.3 93 68.8
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 72.3
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 72.3
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 71.3
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 1.3e-29 132.9 92 70.7
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.3e-29 132.9 88 70.5
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.3e-29 132.9 93 67.7
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 1.3e-29 132.9 93 69.9
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.7e-29 132.5 92 69.6
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 71.0
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 73.1
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 3.7e-29 131.3 92 71.7
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 71.0
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 68.8
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 4.9e-29 131.0 94 73.4
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 4.9e-29 131.0 94 71.3
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 6.4e-29 130.6 89 71.9
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 6.4e-29 130.6 93 67.7
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 6.4e-29 130.6 92 68.5
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 6.4e-29 130.6 91 68.1
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 8.3e-29 130.2 94 71.3
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.1e-28 129.8 93 71.0
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 68.5
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 65.2
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 69.6
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 69.6
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.4e-28 129.4 92 69.6
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 1.4e-28 129.4 94 69.1
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.4e-28 129.4 93 71.0
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.9e-28 129.0 91 72.5
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 72.0
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.9e-28 129.0 92 68.5
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.9e-28 129.0 92 68.5
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.9e-28 129.0 92 70.7
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 68.1
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 70.2
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 71.3
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 67.7
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 72.0
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 69.9
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 4.1e-28 127.9 94 70.2
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.1e-28 127.9 92 66.3
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.4e-28 127.5 93 69.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 7.1e-28 127.1 95 69.5
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 7.1e-28 127.1 94 69.1
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 7.1e-28 127.1 95 70.5
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 9.2e-28 126.7 92 63.0
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 1.2e-27 126.3 88 69.3
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.6e-27 125.9 91 68.1
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 2.7e-27 125.2 94 69.1
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 3.5e-27 124.8 94 70.2
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 3.5e-27 124.8 94 68.1
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 3.5e-27 124.8 93 67.7
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 4.6e-27 124.4 94 70.2
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 4.6e-27 124.4 93 69.9
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 63.4
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 65.6
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 6.0e-27 124.0 93 66.7
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 64.9
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 7.8e-27 123.6 93 68.8
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 7.8e-27 123.6 94 63.8
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.0e-26 123.2 82 67.1
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 1.0e-26 123.2 94 67.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.0e-26 123.2 94 70.2
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.0e-26 123.2 92 67.4
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.3e-26 122.9 93 64.5
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 1.3e-26 122.9 93 62.4
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.3e-26 122.9 91 68.1
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 2.3e-26 122.1 93 65.6
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.3e-26 122.1 92 69.6
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.3e-26 122.1 92 67.4
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.3e-26 122.1 94 67.0
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 3.0e-26 121.7 94 67.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 3.9e-26 121.3 92 62.0
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 5.1e-26 120.9 93 62.4
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 8.6e-26 120.2 91 60.4
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 8.6e-26 120.2 91 64.8
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 8.6e-26 120.2 91 63.7
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.1e-25 119.8 91 67.0
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 1.5e-25 119.4 84 64.3
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 2.5e-25 118.6 91 65.9
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 5.6e-25 117.5 94 63.8
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 1.2e-24 116.3 94 60.6
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 2.1e-24 115.5 93 62.4
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.7e-24 114.4 90 58.9
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 6.2e-24 114.0 92 64.1
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 6.2e-24 114.0 92 60.9
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 6.2e-24 114.0 92 60.9
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 4.0e-23 111.3 91 59.3
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 4.0e-23 111.3 82 72.0
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 4.0e-23 111.3 91 58.2
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 5.2e-23 110.9 91 57.1
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 4.4e-22 107.8 94 60.6
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.4e-22 107.8 92 63.0
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 7.6e-22 107.1 81 67.9
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 2.9e-21 105.1 84 67.9
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 3.7e-21 104.8 82 65.9
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 8.4e-21 103.6 101 56.4
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 9.2e-20 100.1 81 63.0
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.1e-19 99.0 92 55.4
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.7e-19 98.6 79 62.0
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.7e-19 98.6 97 53.6
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 3.5e-19 98.2 81 64.2
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.0e-18 95.1 74 60.8
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.1e-17 93.2 65 69.2
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.3e-17 90.5 74 58.1
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.7e-16 87.8 60 66.7
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 2.0e-14 82.4 66 59.1
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.3e-13 79.7 73 49.3
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.3e-13 79.7 72 56.9
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 8.4e-13 77.0 73 43.8
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 2.4e-12 75.5 91 39.6
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.2e-12 74.7 56 57.1
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 4.6e-11 71.2 71 43.7
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.9e-10 68.2 52 67.3
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 3.9e-10 68.2 52 67.3
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 5.6e-09 64.3 38 73.7
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 3.1e-07 58.5 84 36.9
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 4.0e-07 58.2 73 34.2
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.5e-06 56.2 72 37.5


User provided reference genes

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