Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 0.0e+00 1131.3 632 100.0
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 9.9e-275 949.9 639 82.6
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.5e-262 909.4 633 81.5
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 9.1e-220 767.3 651 68.4
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 3.1e-212 742.3 635 70.7
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.6e-190 669.5 591 69.9
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 3.7e-189 665.6 627 65.7
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 4.3e-177 625.5 627 61.1
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 3.1e-175 619.4 647 58.7
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 1.5e-174 617.1 635 63.5
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 1.5e-174 617.1 635 63.5
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 2.6e-174 616.3 627 60.3
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.6e-171 607.1 627 58.4
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 6.2e-168 595.1 636 61.3
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 1.2e-166 590.9 636 61.2
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 2.6e-166 589.7 636 61.0
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.4e-135 487.6 691 50.1
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 4.9e-88 329.7 468 51.5
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.1e-82 312.0 702 42.0
A09p12310 Brassica napus HOM05D003999 ORTHO05D005219 2.8e-59 234.2 269 58.7
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.2e-57 228.8 248 48.4
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.4e-57 227.3 329 43.2
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 3.4e-57 227.3 329 43.2
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 3.4e-57 227.3 329 45.0
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 5.8e-57 226.5 370 42.7
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.7e-56 224.9 321 44.2
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.8e-56 223.8 328 42.4
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 3.2e-55 220.7 321 43.6
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 5.4e-55 219.9 324 44.1
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 5.4e-55 219.9 324 44.1
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 7.1e-55 219.5 320 43.1
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.6e-54 218.4 238 47.9
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.6e-54 218.4 315 43.5
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 3.5e-54 217.2 382 41.1
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 6.6e-53 213.0 295 44.7
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 8.7e-53 212.6 319 41.4
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 4.3e-52 210.3 330 40.6
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.6e-52 209.9 318 42.1
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.6e-52 209.9 335 40.3
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 5.6e-52 209.9 313 42.8
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 7.3e-52 209.5 345 41.4
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 7.3e-52 209.5 325 41.5
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 1.3e-51 208.8 320 40.6
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.3e-51 208.8 330 40.6
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 2.8e-51 207.6 321 41.1
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 4.8e-51 206.8 324 40.4
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 6.2e-51 206.5 338 39.9
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.4e-50 205.3 349 40.1
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.4e-50 204.5 380 38.2
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.4e-50 204.5 324 39.5
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.4e-50 204.5 306 42.2
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.0e-50 203.8 322 40.7
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 5.3e-50 203.4 255 43.5
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 6.9e-50 203.0 412 35.2
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.2e-49 202.2 312 42.6
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.5e-49 201.8 304 41.1
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.0e-49 201.4 316 39.9
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 4.5e-49 200.3 252 44.0
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 7.6e-49 199.5 324 40.4
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 9.9e-49 199.1 309 41.4
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-48 198.7 359 39.0
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.3e-48 198.7 341 39.0
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.7e-48 198.4 224 44.6
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 1.7e-48 198.4 254 44.9
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.9e-48 197.6 322 40.1
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.8e-48 197.2 302 41.1
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 6.4e-48 196.4 245 44.5
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 6.4e-48 196.4 292 41.8
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 8.4e-48 196.1 303 39.9
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.1e-47 195.7 299 38.8
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.4e-47 195.3 358 39.4
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 3.2e-47 194.1 304 40.1
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 5.4e-47 193.4 314 40.4
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 7.1e-47 193.0 371 37.5
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 1.6e-46 191.8 308 41.2
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.1e-46 191.4 329 38.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 7.9e-46 189.5 323 38.1
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 7.9e-46 189.5 285 41.8
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.0e-45 189.1 334 39.2
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.8e-45 188.3 314 39.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 3.0e-45 187.6 301 40.5
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 8.7e-45 186.0 258 42.6
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.1e-44 185.7 349 36.7
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.1e-44 185.7 318 40.3
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.5e-44 185.3 247 41.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.9e-44 184.9 238 42.0
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.5e-44 184.5 318 40.3
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 3.3e-44 184.1 321 38.0
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.1e-43 181.4 314 36.6
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 3.7e-43 180.6 303 38.9
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 4.8e-43 180.3 399 33.6
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 8.1e-43 179.5 326 38.3
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.1e-42 179.1 352 36.6
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 2.4e-42 177.9 302 39.7
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 6.9e-42 176.4 211 43.6
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 6.9e-42 176.4 153 56.2
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 9.0e-42 176.0 232 40.5
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 9.0e-42 176.0 298 37.9
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 5.8e-41 173.3 310 36.1
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 9.9e-41 172.6 303 37.6
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 9.9e-41 172.6 234 40.2
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 9.9e-41 172.6 317 39.1
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.9e-41 172.6 255 40.8
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 9.9e-41 172.6 302 34.4
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 6.4e-40 169.9 320 37.2
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.1e-39 169.1 299 37.5
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 1.4e-39 168.7 306 35.0
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.4e-39 168.7 294 37.4
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.5e-39 167.9 278 37.8
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 4.6e-38 163.7 396 32.6
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.8e-37 161.8 307 34.5
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 2.3e-37 161.4 254 37.4
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.3e-36 157.5 302 36.1
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 4.3e-36 157.1 151 52.3
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 9.6e-36 156.0 308 34.7
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 8.2e-35 152.9 309 34.3
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.1e-34 152.5 311 36.3
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.1e-34 152.5 279 38.0
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.4e-34 152.1 222 41.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.1e-34 151.0 222 41.9
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 5.3e-34 150.2 309 35.0
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.9e-34 149.8 342 35.1
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.5e-33 147.1 297 36.4
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 2.7e-30 137.9 76 84.2
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.5e-30 137.5 140 49.3
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 4.6e-30 137.1 280 35.7
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 8.7e-29 132.9 343 30.9
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 5.7e-28 130.2 275 31.3
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 7.4e-28 129.8 119 54.6
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 4.8e-27 127.1 267 35.6
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.4e-26 125.6 189 41.3
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 3.4e-25 120.9 113 53.1
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 3.8e-24 117.5 255 31.4
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 4.2e-23 114.0 279 34.1
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 2.1e-22 111.7 122 51.6
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.0e-21 109.4 303 26.7
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 7.4e-20 103.2 282 30.5
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 2.9e-16 91.3 74 52.7
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.5e-15 88.2 139 36.7
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.6e-14 85.5 201 27.9
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-13 80.9 201 35.3
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 5.1e-13 80.5 77 50.6
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 6.7e-13 80.1 273 29.3
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.3e-12 77.8 120 37.5
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.7e-11 75.5 135 37.8
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 2.2e-11 75.1 112 35.7
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 1.8e-10 72.0 172 30.8
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 2.0e-09 68.6 186 30.6
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 4.5e-09 67.4 157 29.9
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 1.0e-08 66.2 111 33.3
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.0e-08 66.2 111 33.3
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.7e-08 65.5 107 33.6
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 5.5e-07 60.5 130 26.9
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 4.7e-06 57.4 167 26.3


User provided reference genes

Program Settings