Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.7e-173 610.5 339 100.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.5e-164 580.5 339 95.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 4.8e-151 538.1 339 91.2
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.0e-145 520.4 339 86.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.0e-133 479.6 339 83.8
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.3e-131 471.1 339 83.5
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.4e-129 466.8 339 81.4
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-129 466.5 340 81.2
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-128 463.4 340 80.6
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-128 463.0 340 80.6
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-128 463.0 340 80.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.2e-119 433.0 339 79.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-119 433.0 339 77.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.1e-117 426.4 334 77.8
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 5.6e-115 418.3 334 76.3
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.2e-112 410.6 344 70.1
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.3e-111 407.1 352 68.8
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.5e-109 399.1 334 74.3
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.3e-107 392.1 350 66.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.6e-101 373.6 285 77.5
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.9e-99 366.7 351 60.4
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.2e-98 364.0 350 60.9
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.2e-98 364.0 351 60.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.2e-98 364.0 351 60.7
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.6e-98 363.6 350 59.7
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.1e-98 363.2 350 60.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.1e-98 363.2 350 60.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.6e-98 362.5 350 60.6
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.1e-97 360.9 351 59.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.4e-97 360.5 351 59.8
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.4e-97 359.8 351 59.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.0e-97 359.0 351 59.0
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-96 357.5 353 59.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.4e-96 355.5 350 58.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 7.6e-96 354.8 349 59.0
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.7e-95 353.6 342 59.4
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.7e-95 353.6 350 59.7
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 2.2e-95 353.2 350 57.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 8.4e-95 351.3 350 59.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 8.4e-95 351.3 350 58.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.4e-94 350.5 350 60.3
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.4e-94 349.7 351 58.4
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.2e-94 349.4 351 58.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.4e-94 348.6 351 58.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.4e-94 348.6 350 58.0
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 5.4e-94 348.6 351 58.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.1e-94 348.2 351 58.1
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-93 347.4 350 58.0
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.6e-93 347.1 350 56.9
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.1e-93 346.7 350 59.1
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.1e-93 346.7 378 56.3
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 3.5e-93 345.9 350 57.4
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-93 345.5 351 57.8
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 4.6e-93 345.5 350 56.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.7e-92 343.6 340 58.5
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.1e-92 342.0 350 57.1
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.1e-91 340.9 340 58.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.9e-91 340.1 340 57.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 3.3e-91 339.3 345 57.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.3e-91 339.3 350 56.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.3e-90 337.4 350 56.6
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.6e-90 337.0 342 61.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-90 337.0 320 60.6
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.8e-90 336.3 350 57.7
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.1e-90 334.7 342 59.6
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.1e-89 334.3 350 54.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.1e-89 332.8 350 56.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.9e-89 331.6 347 56.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.0e-88 330.1 346 56.1
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.5e-88 328.9 350 56.9
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 4.5e-88 328.9 344 57.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 5.8e-88 328.6 350 56.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.7e-87 327.0 320 60.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.7e-87 327.0 350 56.3
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.8e-87 325.9 342 56.1
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 6.4e-87 325.1 350 56.3
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 7.1e-86 321.6 350 55.4
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.7e-85 319.7 350 55.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 3.0e-84 316.2 350 54.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.9e-84 315.8 319 56.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.1e-83 314.3 351 54.7
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-83 314.3 339 56.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.5e-83 313.9 350 53.7
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 5.6e-83 312.0 345 54.8
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 7.4e-83 311.6 319 56.1
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.8e-82 308.9 350 53.1
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.1e-81 306.2 313 55.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.9e-81 305.1 324 56.2
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 4.5e-80 302.4 350 54.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.6e-80 301.6 351 53.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.3e-79 300.8 350 52.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 4.9e-79 298.9 333 54.7
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.4e-79 298.5 348 52.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 3.2e-78 296.2 352 53.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 4.2e-78 295.8 350 52.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.2e-77 294.3 337 52.8
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-77 293.9 311 59.8
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.7e-77 293.1 350 52.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 4.6e-77 292.4 340 53.8
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.0e-76 291.2 335 53.7
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.7e-76 288.5 346 51.2
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.5e-75 286.6 330 52.7
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.3e-75 286.2 350 50.6
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.3e-75 286.2 350 50.6
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 8.2e-74 281.6 399 46.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-73 280.4 350 51.7
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 3.1e-73 279.6 337 54.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.6e-72 276.6 320 52.2
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.6e-72 276.6 350 51.4
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.6e-72 276.6 339 49.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.3e-71 274.2 350 49.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.7e-71 273.9 351 48.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 6.5e-71 271.9 350 50.9
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.9e-70 270.4 343 48.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.2e-70 269.2 350 49.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.1e-70 268.5 337 49.0
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.6e-69 267.3 320 50.6
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 6.0e-69 265.4 337 48.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.3e-68 264.2 343 49.0
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.8e-68 263.8 335 50.4
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.7e-68 261.9 294 52.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.1e-67 261.2 371 46.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-66 257.7 288 54.9
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.2e-66 256.9 294 52.0
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.7e-66 256.1 350 46.3
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.1e-65 254.6 345 46.1
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.4e-65 254.2 292 51.4
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.8e-65 253.8 357 46.2
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 4.5e-64 249.2 262 55.7
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 7.7e-64 248.4 274 54.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 7.7e-64 248.4 337 49.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-63 247.7 274 53.3
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.3e-63 247.7 351 46.7
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.7e-63 247.3 266 53.4
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.9e-63 246.5 286 51.0
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-62 244.2 337 47.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.2e-61 241.1 350 45.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.6e-61 240.7 292 51.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.7e-61 240.0 334 47.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 6.7e-60 235.3 350 46.3
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 9.7e-59 231.5 289 49.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 5.5e-54 215.7 349 42.7
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.8e-52 208.4 290 51.7
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.3e-51 206.5 339 44.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 9.7e-51 204.9 138 81.9
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.8e-50 203.4 350 40.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.2e-50 201.8 300 46.3
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.8e-49 200.7 346 41.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.1e-49 199.9 325 42.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.5e-46 190.3 350 38.3
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.1e-45 187.2 237 49.4
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 8.0e-45 185.3 348 37.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.3e-44 183.7 265 43.8
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.2e-44 182.6 314 43.9
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.4e-41 174.5 282 47.9
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.4e-41 173.7 242 44.6
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 3.5e-40 169.9 294 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.0e-39 168.3 340 35.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.6e-37 161.0 299 45.5
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.1e-37 160.6 139 62.6
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.6e-37 159.8 158 58.9
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.4e-36 157.9 351 36.2
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 9.7e-35 151.8 176 50.0
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.8e-34 150.2 336 42.3
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.8e-34 150.2 336 42.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 5.3e-33 146.0 341 33.4
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 5.2e-28 129.4 329 30.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.7e-24 117.1 127 63.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.5e-22 110.5 308 38.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.8e-20 104.4 172 41.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.3e-20 104.0 171 42.1
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.2e-19 101.7 111 62.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.1e-14 85.1 55 81.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.6e-13 81.3 54 79.6
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 2.2e-10 70.9 132 47.0
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 5.4e-09 66.2 125 44.0
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 6.6e-07 59.3 125 41.6


User provided reference genes

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