Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 4.0e-30 134.0 64 100.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.4e-22 109.0 63 81.0
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 1.4e-22 109.0 63 81.0
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.8e-22 108.6 63 79.4
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.8e-22 108.6 63 79.4
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 3.0e-22 107.8 63 79.4
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 3.0e-22 107.8 63 79.4
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 3.0e-22 107.8 63 79.4
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 3.0e-22 107.8 63 79.4
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 3.0e-22 107.8 63 79.4
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 3.0e-22 107.8 63 79.4
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 5.2e-22 107.1 63 79.4
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 6.8e-22 106.7 63 79.4
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 8.9e-22 106.3 63 77.8
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 2.2e-20 101.7 63 71.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 2.2e-20 101.7 63 73.0
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 3.7e-20 100.9 63 71.4
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 3.7e-20 100.9 63 71.4
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 3.7e-20 100.9 63 71.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 4.9e-20 100.5 63 69.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 6.4e-20 100.1 63 71.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 8.3e-20 99.8 63 71.4
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.1e-19 99.4 63 69.8
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 1.4e-19 99.0 63 71.4
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 1.8e-19 98.6 63 73.0
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.8e-19 98.6 63 69.8
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 3.2e-19 97.8 63 73.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 5.4e-19 97.1 63 71.4
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 5.4e-19 97.1 63 68.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 7.0e-19 96.7 63 69.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 7.0e-19 96.7 63 68.3
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 7.0e-19 96.7 63 68.3
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 7.0e-19 96.7 63 69.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 7.0e-19 96.7 63 69.8
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 68.3
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 68.3
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 68.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 68.3
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 69.8
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 71.4
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 9.2e-19 96.3 63 66.7
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 1.2e-18 95.9 63 69.8
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.2e-18 95.9 63 68.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.2e-18 95.9 63 69.8
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 1.6e-18 95.5 63 69.8
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 1.6e-18 95.5 63 68.3
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.6e-18 95.5 63 68.3
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 2.0e-18 95.1 63 68.3
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 2.0e-18 95.1 63 68.3
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.0e-18 95.1 63 66.7
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.0e-18 95.1 63 69.8
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 2.0e-18 95.1 63 68.3
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 2.7e-18 94.7 63 69.8
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 2.7e-18 94.7 63 69.8
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.7e-18 94.7 63 69.8
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 2.7e-18 94.7 63 69.8
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.5e-18 94.4 63 69.8
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 3.5e-18 94.4 63 66.7
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 3.5e-18 94.4 63 68.3
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.5e-18 94.4 63 66.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 3.5e-18 94.4 63 66.7
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 3.5e-18 94.4 63 68.3
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.6e-18 94.0 63 65.1
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 4.6e-18 94.0 63 65.1
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.6e-18 94.0 63 68.3
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 4.6e-18 94.0 63 65.1
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 4.6e-18 94.0 63 69.8
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 4.6e-18 94.0 63 65.1
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 5.9e-18 93.6 63 68.3
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 5.9e-18 93.6 63 68.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 7.8e-18 93.2 63 66.7
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 7.8e-18 93.2 63 66.7
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 7.8e-18 93.2 63 66.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 7.8e-18 93.2 63 68.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.0e-17 92.8 63 66.7
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.0e-17 92.8 63 68.3
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 1.3e-17 92.4 63 66.7
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 1.3e-17 92.4 63 66.7
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.3e-17 92.4 63 68.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 1.3e-17 92.4 63 66.7
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.7e-17 92.0 63 65.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.7e-17 92.0 63 66.7
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.7e-17 92.0 63 65.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.3e-17 91.7 63 66.7
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 66.7
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 66.7
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 66.7
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 66.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 66.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 65.1
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 3.0e-17 91.3 63 66.7
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 3.9e-17 90.9 63 65.1
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 3.9e-17 90.9 63 65.1
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 3.9e-17 90.9 63 65.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.0e-17 90.5 63 63.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 5.0e-17 90.5 63 66.7
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 5.0e-17 90.5 63 63.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 6.6e-17 90.1 63 63.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 6.6e-17 90.1 63 63.5
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 6.6e-17 90.1 63 63.5
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.1e-16 89.4 62 61.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.5e-16 89.0 63 65.1
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.5e-16 89.0 63 65.1
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.5e-16 89.0 63 65.1
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.9e-16 88.6 63 63.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 2.5e-16 88.2 63 63.5
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 2.5e-16 88.2 63 65.1
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 7.3e-16 86.7 63 63.5
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.2e-15 85.9 63 61.9
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.6e-15 85.5 58 67.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.1e-15 85.1 62 59.7
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 2.8e-15 84.7 63 61.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.3e-14 81.6 61 55.7
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.2e-14 80.5 62 54.8
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 3.4e-13 77.8 50 72.0
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 3.4e-13 77.8 58 62.1
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 4.4e-13 77.4 58 62.1
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 2.9e-12 74.7 61 59.0
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.4e-12 73.6 63 55.6
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.9e-11 72.0 57 59.6
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.3e-09 65.1 40 72.5
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 3.3e-08 61.2 58 43.1
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 4.3e-08 60.8 58 41.4


User provided reference genes

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