Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G11270 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 3.8e-41 171.0 84 100.0
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 2.3e-09 65.5 34 91.2
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 1.1e-08 63.2 34 88.2
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 1.9e-08 62.4 34 88.2
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 4.3e-08 61.2 34 85.3
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 4.3e-08 61.2 34 85.3
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 4.3e-08 61.2 34 85.3
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 5.6e-08 60.8 34 82.4
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 5.6e-08 60.8 34 82.4
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 5.6e-08 60.8 34 82.4
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 5.6e-08 60.8 34 82.4
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 5.6e-08 60.8 34 85.3
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
CARHR139510 Cardamine hirsuta HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 7.3e-08 60.5 34 82.4
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 9.6e-08 60.1 34 82.4
Actinidia05844 Actinidia chinensis HOM05D002030 ORTHO05D026400 1.2e-07 59.7 34 82.4
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Actinidia21583 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Dinv43938 Davidia involucrata HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 1.2e-07 59.7 34 82.4
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 1.6e-07 59.3 34 79.4
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 1.6e-07 59.3 34 79.4
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 1.6e-07 59.3 34 79.4
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 2.1e-07 58.9 34 79.4
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 2.1e-07 58.9 34 82.4
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 2.1e-07 58.9 34 79.4
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 2.1e-07 58.9 34 79.4
BraA09t42224Z Brassica rapa HOM05D002030 ORTHO05D026400 2.8e-07 58.5 34 79.4
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 2.8e-07 58.5 34 79.4
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 2.8e-07 58.5 34 76.5
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 2.8e-07 58.5 34 79.4
SGA_v2.0_scaffold4G02232 Striga asiatica HOM05D002030 ORTHO05D004391 2.8e-07 58.5 34 79.4
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 2.8e-07 58.5 34 76.5
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 79.4
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 76.5
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 76.5
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 76.5
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 79.4
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 3.6e-07 58.2 33 81.8
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 82.4
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 79.4
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 79.4
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 79.4
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 3.6e-07 58.2 34 79.4
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 4.7e-07 57.8 34 79.4
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 6.2e-07 57.4 34 79.4
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 6.2e-07 57.4 34 79.4
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 6.2e-07 57.4 34 79.4
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 6.2e-07 57.4 34 76.5
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 6.2e-07 57.4 34 79.4
TAR636G2333 Trochodendron aralioides HOM05D002030 ORTHO05D004391 6.2e-07 57.4 33 78.8
ATR0626G287 Amborella trichopoda HOM05D002030 ORTHO05D026400 8.1e-07 57.0 34 79.4
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 8.1e-07 57.0 34 76.5
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 8.1e-07 57.0 33 78.8
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 8.1e-07 57.0 34 76.5
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 76.5
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 1.1e-06 56.6 34 73.5
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 1.4e-06 56.2 34 76.5
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 1.4e-06 56.2 34 76.5
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 1.4e-06 56.2 34 76.5
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 1.8e-06 55.8 34 76.5
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 1.8e-06 55.8 34 76.5
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 2.4e-06 55.5 34 76.5
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 3.1e-06 55.1 34 76.5
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 4.0e-06 54.7 33 75.8
CSS0014563 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 5.2e-06 54.3 34 76.5
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 5.2e-06 54.3 34 73.5
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 5.2e-06 54.3 34 73.5
Lsat_1_v5_gn_4_46541 Lactuca sativa HOM05D002030 ORTHO05D004391 5.2e-06 54.3 34 73.5
Nn2g15681 Nelumbo nucifera HOM05D002030 ORTHO05D004391 5.2e-06 54.3 34 73.5
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 9.0e-06 53.5 34 70.6
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 9.0e-06 53.5 34 70.6
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 9.0e-06 53.5 35 71.4


User provided reference genes

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