Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.1e-204 716.5 363 100.0
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.1e-204 716.5 363 100.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 2.6e-203 711.8 363 99.2
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 2.6e-203 711.8 363 99.2
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 2.6e-203 711.8 363 99.2
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 2.4e-201 705.3 363 98.1
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 1.0e-199 699.9 364 98.1
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 1.3e-165 586.6 352 86.6
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 4.8e-165 584.7 366 85.2
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.7e-162 576.2 366 84.2
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 2.2e-162 575.9 352 85.8
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 7.2e-161 570.9 353 85.8
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 9.4e-161 570.5 350 85.7
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 8.2e-157 557.4 349 84.8
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 1.8e-156 556.2 350 83.1
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.7e-155 552.4 352 83.5
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.8e-149 531.6 347 81.8
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 5.4e-148 528.1 344 82.8
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 4.5e-147 525.0 365 77.3
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 2.0e-134 483.0 335 78.5
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.2e-132 475.7 279 86.7
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.2e-132 475.7 279 86.7
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 4.1e-132 475.3 327 78.0
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 4.1e-132 475.3 327 78.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 1.5e-129 466.8 338 75.1
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 3.6e-128 462.2 279 83.9
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.2e-127 458.4 312 78.8
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 6.0e-123 444.9 282 83.0
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 1.7e-117 426.8 216 99.1
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 2.9e-117 426.0 259 85.3
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 1.5e-113 413.7 312 73.4
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.2e-112 410.6 256 84.0
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 8.4e-109 397.9 291 72.5
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 5.8e-102 375.2 235 84.3
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.1e-97 360.9 257 74.7
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 3.1e-95 352.8 256 73.4
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.5e-94 350.5 228 81.1
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 4.9e-93 345.5 210 84.8
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 5.4e-92 342.0 206 85.4
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 3.5e-91 339.3 229 79.0
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 8.7e-90 334.7 206 83.0
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 2.1e-88 330.1 361 57.9
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 1.8e-82 310.5 202 81.2
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 5.1e-82 308.9 226 73.9
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 1.2e-75 287.7 190 78.9
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 7.9e-75 285.0 214 70.6
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 7.9e-75 285.0 214 70.6
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 7.9e-75 285.0 214 70.6
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 1.4e-68 264.2 216 66.2
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 2.8e-64 250.0 169 77.5
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.4e-63 247.7 148 87.8
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 5.0e-61 239.2 163 76.7
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 1.9e-60 237.3 135 94.1
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 1.6e-59 234.2 200 67.5
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 8.8e-58 228.4 262 51.9
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 6.3e-56 222.2 240 52.9
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 8.2e-56 221.9 240 53.3
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 6.5e-53 212.2 178 70.2
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-52 210.7 174 67.2
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.0e-50 203.4 141 77.3
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 2.0e-49 200.7 173 62.4
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.3e-49 199.9 137 78.1
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 6.3e-48 195.7 154 70.8
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 6.3e-48 195.7 154 70.8
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 6.3e-48 195.7 154 70.8
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 6.3e-48 195.7 154 70.8
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-46 191.4 167 67.1
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 5.9e-46 189.1 150 70.0
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.7e-45 187.6 134 71.6
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.3e-41 173.3 138 67.4
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.5e-38 162.9 127 66.9
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-35 154.5 137 60.6
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 2.1e-35 154.1 80 96.2
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 1.2e-33 148.3 91 79.1
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 2.6e-33 147.1 88 79.5
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 9.8e-33 145.2 90 85.6
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 9.1e-31 138.7 110 62.7
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 4.5e-30 136.3 86 82.6
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.3e-28 130.2 100 66.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.8e-24 117.1 110 62.7
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.8e-23 114.4 183 42.1
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.4e-23 114.0 134 54.5
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.0e-21 108.6 125 56.0
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-20 105.1 62 82.3
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-18 98.2 67 77.6
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 3.1e-18 97.1 50 96.0
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 5.8e-17 92.8 100 56.0
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 3.2e-15 87.0 58 82.8
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 4.6e-14 83.2 62 66.1
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-13 81.6 62 64.5
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 1.3e-13 81.6 90 55.6
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 4.3e-12 76.6 50 70.0
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.5e-09 68.2 35 88.6
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.9e-08 63.2 37 86.5
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 7.0e-07 59.3 37 75.7
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.6e-06 58.2 50 76.0


User provided reference genes

Program Settings