Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.6e-103 379.4 186 100.0
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.6e-103 379.4 186 100.0
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.6e-103 379.4 186 100.0
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 2.1e-103 379.0 186 99.5
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 2.1e-103 379.0 186 99.5
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 2.1e-103 379.0 186 99.5
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 5.1e-102 374.4 186 98.9
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 8.7e-102 373.6 186 98.4
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.9e-101 372.5 184 98.4
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 3.6e-100 368.2 184 97.3
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-99 366.7 179 99.4
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 2.4e-99 365.5 186 96.2
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.7
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.7
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.7
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.2
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.2
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.2
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 5.8e-98 360.9 186 95.2
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.2e-97 359.0 184 95.7
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 8.4e-97 357.1 186 94.6
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 8.4e-97 357.1 186 94.6
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 8.4e-97 357.1 186 94.6
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.6e-95 352.8 186 94.1
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.6e-95 352.8 186 94.1
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.7e-94 349.4 187 93.0
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.7e-94 349.4 187 93.0
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 8.7e-94 347.1 189 91.5
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.5e-93 346.3 183 91.3
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 3.3e-93 345.1 183 92.3
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 4.3e-93 344.7 184 92.9
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 6.2e-92 340.9 188 92.0
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.1e-91 340.1 186 90.3
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 2.0e-90 335.9 186 90.9
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.9e-89 331.3 188 89.4
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 9.3e-88 327.0 188 87.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 9.3e-88 327.0 188 87.8
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 3.5e-87 325.1 183 88.5
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.6e-87 324.7 187 88.8
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.6e-87 324.7 187 88.8
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 4.6e-87 324.7 187 88.8
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.6e-87 324.7 187 88.8
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 4.6e-87 324.7 188 87.2
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 4.6e-87 324.7 188 87.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 6.0e-87 324.3 186 87.6
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 6.0e-87 324.3 186 87.6
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 5.1e-86 321.2 185 88.1
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.9e-85 319.3 186 86.0
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-84 316.6 186 85.5
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 8.1e-84 313.9 187 87.2
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 5.5e-80 301.2 191 82.7
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 5.1e-78 294.7 183 83.6
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.1e-77 293.5 182 81.9
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.1e-77 293.5 153 94.1
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.5e-77 293.1 159 91.8
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 7.4e-77 290.8 159 91.2
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.1e-75 287.0 173 86.1
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.4e-75 285.8 187 79.1
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.0e-75 285.0 173 85.5
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 9.0e-75 283.9 173 85.5
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 4.5e-74 281.6 156 91.7
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.2e-73 279.3 188 79.3
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 4.2e-72 275.0 167 85.6
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.1e-71 272.7 159 84.9
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.1e-67 260.4 187 74.9
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 3.4e-66 255.4 168 82.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 3.0e-62 242.3 147 83.7
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 9.4e-56 220.7 189 59.3
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-55 220.3 150 76.7
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 7.9e-55 217.6 129 86.8
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.6e-53 212.6 134 78.4
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 4.8e-52 208.4 110 90.9
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.4e-51 206.1 178 65.2
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 7.0e-51 204.5 181 63.5
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 9.1e-51 204.1 133 82.0
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.4e-48 196.8 115 87.0
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 5.5e-48 194.9 181 60.2
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 5.5e-48 194.9 181 60.2
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 5.5e-48 194.9 179 62.0
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.6e-47 193.4 181 59.7
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.6e-47 193.4 181 59.7
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.9e-40 169.9 95 85.3
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.2e-37 160.6 108 76.9
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.7e-37 158.3 108 75.9
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.7e-36 156.8 173 55.5
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.6e-34 150.2 106 76.4
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 3.5e-34 149.1 84 86.9
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.9e-33 146.0 85 83.5
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.0e-33 145.2 86 83.7
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 2.5e-32 142.9 72 94.4
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.1e-31 139.8 109 68.8
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.4e-30 137.1 109 67.9
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 4.0e-30 135.6 72 90.3
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 6.8e-30 134.8 74 89.2
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.5e-29 133.7 68 92.6
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.5e-29 133.7 68 92.6
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 7.5e-29 131.3 106 68.9
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.8e-28 129.4 77 83.1
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 4.8e-28 128.6 74 82.4
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 2.3e-25 119.8 66 86.4
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-24 117.5 69 81.2
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 4.2e-24 115.5 184 37.0
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.0e-22 110.9 70 74.3
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.4e-22 110.5 74 75.7
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-21 107.5 68 76.5
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.7e-20 102.4 65 73.8
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.9e-20 102.1 64 70.3
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.4e-19 100.5 61 78.7
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 1.8e-19 100.1 71 71.8
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.7e-18 96.3 55 81.8
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 3.6e-15 85.9 53 81.1
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.4e-14 84.0 49 79.6
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.1e-14 82.8 53 81.1
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 5.8e-13 78.6 62 67.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.7e-12 77.0 53 69.8
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.4e-11 73.9 49 73.5
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.2e-11 72.8 66 57.6
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-10 70.9 52 65.4
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-10 70.1 39 79.5
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 3.9e-09 65.9 42 76.2
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 5.0e-09 65.5 34 91.2
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.5e-08 63.9 39 76.9
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 1.2e-07 60.8 56 60.7
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.2e-07 60.8 59 62.7
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.6e-07 60.5 36 72.2
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.7e-07 58.9 39 64.1
Pp3c2_23470 Physcomitrium patens HOM05D002864 ORTHO05D008485 1.8e-06 57.0 55 61.8
MELO3C030561.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.9e-06 54.7 40 70.0


User provided reference genes

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