Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 9.8e-264 912.9 461 100.0
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.0e-248 862.1 460 93.9
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 1.2e-232 809.7 457 88.6
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 6.4e-223 777.3 458 85.4
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 7.9e-221 770.4 461 83.7
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 2.7e-213 745.3 462 83.1
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 6.7e-212 740.7 463 82.9
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.9e-211 739.2 464 82.8
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.9e-211 739.2 463 82.7
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 6.9e-209 730.7 495 78.2
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 1.9e-206 722.6 458 79.9
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.0e-191 673.7 462 73.4
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 2.8e-162 575.9 443 64.3
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 8.3e-162 574.3 461 64.4
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 1.1e-161 573.9 451 64.5
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.4e-161 572.8 439 65.8
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 1.2e-160 570.5 439 65.8
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 2.0e-160 569.7 440 64.8
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 7.7e-160 567.8 449 65.3
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 1.1e-158 563.9 434 65.7
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 4.3e-158 562.0 441 64.4
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.6e-157 558.9 441 63.9
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 2.3e-156 556.2 436 64.2
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 4.4e-155 552.0 445 64.3
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 5.7e-155 551.6 441 65.5
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 7.5e-155 551.2 447 63.8
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.9e-154 549.3 441 65.1
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 2.9e-154 549.3 445 63.4
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.1e-153 547.4 449 62.4
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 1.8e-153 546.6 445 63.8
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 3.2e-153 545.8 463 60.0
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 2.0e-152 543.1 317 86.4
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 4.6e-152 542.0 451 59.4
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 5.9e-152 541.6 317 86.8
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 7.8e-152 541.2 446 61.2
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 1.3e-151 540.4 450 62.9
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 2.3e-151 539.7 451 59.4
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 5.0e-151 538.5 440 61.4
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 6.6e-151 538.1 455 60.4
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.1e-150 537.3 450 62.9
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 4.3e-150 535.4 437 61.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 5.6e-150 535.0 414 65.2
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 9.5e-150 534.3 442 62.9
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 4.7e-149 531.9 445 59.8
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 2.3e-148 529.6 433 63.5
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.1e-148 529.3 447 61.5
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.0e-147 526.6 454 61.5
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 2.6e-147 526.2 445 60.4
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 4.4e-147 525.4 442 62.0
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.8e-147 525.0 448 58.9
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 7.5e-147 524.6 444 62.2
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 9.8e-147 524.2 433 61.0
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.3e-146 523.9 408 64.5
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.3e-146 523.9 441 60.5
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 2.2e-146 523.1 443 59.8
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 3.7e-146 522.3 407 65.4
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 4.1e-145 518.8 433 61.0
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 7.0e-145 518.1 442 61.3
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 3.5e-144 515.8 455 58.9
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.0e-144 515.0 438 60.5
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.3e-143 513.8 438 58.9
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.7e-143 513.5 450 57.8
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 6.6e-143 511.5 431 61.0
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 8.6e-143 511.1 439 59.9
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 7.3e-142 508.1 439 59.2
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 1.2e-141 507.3 439 59.7
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.6e-141 506.9 437 59.3
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 2.8e-141 506.1 465 58.5
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.4e-140 503.8 451 59.0
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.8e-140 503.4 447 57.0
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.8e-140 503.4 411 61.1
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.3e-138 497.3 467 56.1
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 2.2e-138 496.5 437 59.7
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 3.7e-138 495.7 391 64.5
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 8.9e-132 474.6 446 58.5
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 2.0e-131 473.4 400 61.2
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.8e-130 469.2 444 55.9
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.6e-128 463.8 442 56.6
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 3.3e-126 456.1 514 49.4
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.5e-123 447.2 433 53.1
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.6e-123 446.4 438 54.3
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.4e-123 446.0 367 62.7
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 3.0e-119 433.0 433 50.1
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.6e-117 427.2 443 53.5
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.8e-116 423.7 449 49.2
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.5e-115 420.6 437 54.7
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 3.4e-115 419.5 433 51.7
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.3e-109 401.0 309 62.8
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.1e-108 397.9 320 63.1
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 4.0e-108 396.0 369 58.5
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 9.9e-107 391.3 719 36.4
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 8.4e-106 388.3 366 54.4
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 3.9e-103 379.4 317 59.6
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 5.8e-99 365.5 304 59.5
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 1.2e-96 357.8 319 58.9
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.2e-96 357.8 375 47.2
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 4.6e-96 355.9 385 48.1
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 7.9e-96 355.1 443 46.7
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 3.4e-91 339.7 312 56.4
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 8.5e-90 335.1 311 58.2
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 4.2e-81 306.2 231 66.2
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.0e-74 285.0 347 46.7
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.7e-74 284.3 383 45.2
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.4e-68 264.6 435 38.9
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 8.8e-63 245.4 222 56.8
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.0e-62 244.2 248 54.0
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 5.3e-60 236.1 163 66.3
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 5.3e-60 236.1 229 56.3
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.7e-58 231.1 216 56.5
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 3.1e-52 210.3 212 53.3
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 7.0e-44 182.6 131 69.5
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 2.9e-42 177.2 234 44.4
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 8.6e-42 175.6 136 61.8
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.0e-38 164.5 157 54.1
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 1.2e-35 155.2 144 59.0
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 3.6e-32 143.7 137 58.4
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 4.1e-28 130.2 101 63.4
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 7.8e-27 125.9 135 53.3
AL1G13210 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 3.1e-23 114.0 62 91.9
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 4.0e-23 113.6 398 25.9
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 8.3e-21 105.9 408 24.5
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 1.4e-20 105.1 107 46.7
AL1G10030 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.6e-19 101.7 54 92.6
AL4G27190 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 4.6e-19 100.1 54 90.7
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 7.8e-19 99.4 375 24.8
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 2.1e-16 91.3 142 40.8
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 4.0e-15 87.0 76 59.2
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 5.8e-14 83.2 52 76.9
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 2.1e-08 64.7 405 23.2
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.4e-07 61.2 35 82.9


User provided reference genes

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