Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.2e-62 243.0 122 100.0
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.7e-42 176.0 90 94.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 4.7e-40 167.9 90 90.0
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.9e-36 156.0 90 81.1
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.5e-35 151.8 90 78.9
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 8.1e-32 140.6 89 75.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.4e-28 129.8 80 73.8
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 5.6e-25 117.9 85 58.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.4e-23 113.2 89 64.0
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.4e-23 113.2 89 64.0
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.4e-23 113.2 89 64.0
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.6e-22 109.0 91 61.5
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.6e-22 109.0 91 61.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.9e-21 105.5 88 51.1
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 9.6e-17 90.5 79 55.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 3.6e-16 88.6 82 41.5
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.8e-15 86.3 83 45.8
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 4.0e-15 85.1 83 47.0
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.9e-15 84.3 83 43.4
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 9.0e-15 84.0 82 40.2
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.5e-14 81.6 82 41.5
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.5e-14 81.6 83 42.2
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 5.8e-14 81.3 82 41.5
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 9.9e-14 80.5 112 36.6
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 9.9e-14 80.5 82 41.5
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 9.9e-14 80.5 85 41.2
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.3e-13 80.1 87 39.1
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.3e-13 80.1 83 42.2
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.2e-13 79.3 84 39.3
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.2e-13 79.3 82 42.7
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 2.2e-13 79.3 84 40.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.9e-13 79.0 87 42.5
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 6.4e-13 77.8 83 39.8
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 8.4e-13 77.4 83 38.6
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.1e-12 77.0 85 38.8
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.1e-12 77.0 84 36.9
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.1e-12 77.0 87 37.9
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.9e-12 76.3 85 36.5
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.9e-12 76.3 87 39.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.4e-12 75.9 79 39.2
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 2.4e-12 75.9 85 36.5
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.2e-12 75.5 82 40.2
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 4.2e-12 75.1 84 40.5
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 5.4e-12 74.7 85 37.6
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 5.4e-12 74.7 85 37.6
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.4e-12 74.7 76 42.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.2e-11 73.6 82 40.2
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.6e-11 73.2 82 40.2
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.6e-11 73.2 82 35.4
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 2.1e-11 72.8 82 39.0
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 2.1e-11 72.8 82 35.4
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.7e-11 72.4 87 34.5
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 2.7e-11 72.4 82 37.8
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 3.5e-11 72.0 77 36.4
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.5e-11 72.0 87 31.0
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 3.5e-11 72.0 78 29.5
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 6.0e-11 71.2 87 33.3
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 7.9e-11 70.9 80 36.2
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 1.3e-10 70.1 85 38.8
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.8e-10 69.7 88 35.2
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.3e-10 69.3 79 30.4
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 2.3e-10 69.3 78 42.3
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 3.0e-10 68.9 82 37.8
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 6.7e-10 67.8 78 37.2
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 6.7e-10 67.8 79 36.7
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.7e-10 67.8 80 40.0
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 6.7e-10 67.8 76 42.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 8.7e-10 67.4 88 33.0
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.1e-09 67.0 78 35.9
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.1e-09 67.0 94 36.2
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-09 66.6 96 35.4
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.9e-09 66.2 78 35.9
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.9e-09 66.2 81 33.3
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.9e-09 66.2 96 36.5
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.6e-08 63.2 82 35.4
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.6e-08 63.2 82 35.4
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.6e-08 63.2 82 34.1
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.1e-08 62.8 84 36.9
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.8e-08 62.4 75 37.3
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.8e-08 62.4 80 38.8
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 3.7e-08 62.0 76 35.5
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 4.8e-08 61.6 77 35.1
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.2e-08 61.2 108 31.5
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 8.1e-08 60.8 84 35.7
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 8.1e-08 60.8 87 32.2
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.1e-08 60.8 87 32.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.1e-08 60.8 87 32.2
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.1e-08 60.8 87 32.2
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.1e-07 60.5 77 33.8
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.1e-07 60.5 87 33.3
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.4e-07 60.1 84 36.9
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-07 59.7 84 35.7
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.8e-07 59.7 84 35.7
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 2.4e-07 59.3 84 35.7
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.4e-07 59.3 45 46.7
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 5.3e-07 58.2 84 33.3
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-06 57.0 84 33.3
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.2e-06 57.0 84 33.3
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.5e-06 56.6 79 29.1
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.5e-06 56.6 79 32.9
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.5e-06 56.6 79 29.1
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.5e-06 56.6 79 32.9
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.5e-06 56.6 79 29.1
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.0e-06 56.2 77 35.1
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.0e-06 56.2 79 32.9
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 2.6e-06 55.8 90 30.0
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.6e-06 55.8 82 31.7
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 5.8e-06 54.7 85 28.2


User provided reference genes

Program Settings